Wall clock time and date at job start Sun Mar 29 2020 23:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38538 * 120.32495 * 2 1 4 4 N 1.31527 * 120.92955 * 180.23016 * 3 2 1 5 5 C 1.32834 * 121.65908 * 359.48493 * 4 3 2 6 6 C 1.48009 * 119.71964 * 180.24117 * 5 4 3 7 7 O 1.21566 * 119.99576 * 174.73644 * 6 5 4 8 8 N 1.34775 * 120.00342 * 354.73261 * 6 5 4 9 9 C 1.46498 * 119.99825 * 5.00551 * 8 6 5 10 10 C 1.36788 * 119.99910 * 185.00869 * 8 6 5 11 11 H 1.08000 * 120.00115 * 31.60716 * 10 8 6 12 12 C 1.39104 * 119.99396 * 211.61432 * 10 8 6 13 13 N 1.31315 * 120.00517 * 13.16359 * 12 10 8 14 14 Si 1.86800 * 119.99735 * 193.16461 * 12 10 8 15 15 H 1.48501 * 109.47123 * 89.99641 * 14 12 10 16 16 H 1.48501 * 109.47150 * 209.99934 * 14 12 10 17 17 H 1.48504 * 109.47156 * 329.99839 * 14 12 10 18 18 C 1.39316 * 120.55253 * 0.51968 * 5 4 3 19 19 C 1.38744 * 119.03814 * 359.74130 * 18 5 4 20 20 Cl 1.73603 * 120.76488 * 179.97438 * 19 18 5 21 21 H 1.08997 * 109.47153 * 89.99778 * 1 2 3 22 22 H 1.09001 * 109.47010 * 209.99641 * 1 2 3 23 23 H 1.08997 * 109.47167 * 329.99464 * 1 2 3 24 24 H 1.08001 * 119.53515 * 359.96396 * 3 2 1 25 25 H 1.09002 * 109.46937 * 63.37995 * 9 8 6 26 26 H 1.08997 * 109.47222 * 183.38106 * 9 8 6 27 27 H 1.09004 * 109.47478 * 303.37889 * 9 8 6 28 28 H 0.97001 * 120.00295 * 180.02562 * 13 12 10 29 29 H 1.08000 * 120.48301 * 179.72542 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.1958 0.0000 4 7 3.5216 1.2097 -0.0045 5 6 4.2307 0.0865 0.0009 6 6 5.7094 0.1522 0.0009 7 8 6.3630 -0.8677 0.1024 8 7 6.3310 1.3427 -0.1118 9 6 5.5470 2.5802 -0.1238 10 6 7.6940 1.3955 -0.2150 11 1 8.2301 0.5941 -0.7016 12 6 8.3894 2.4812 0.3071 13 7 7.7852 3.3203 1.1166 14 14 10.1828 2.7457 -0.1435 15 1 10.2678 3.5932 -1.3600 16 1 10.8811 3.4208 0.9799 17 1 10.8254 1.4334 -0.4087 18 6 3.5943 -1.1528 0.0008 19 6 2.2076 -1.1978 0.0004 20 17 1.3684 -2.7175 -0.0004 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6641 2.1298 -0.0006 25 1 5.0323 2.6934 0.8304 26 1 6.2115 3.4298 -0.2813 27 1 4.8140 2.5382 -0.9294 28 1 8.2701 4.0776 1.4803 29 1 4.1720 -2.0653 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197287815.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:18 Heat of formation + Delta-G solvation = 10.141369 kcal Electronic energy + Delta-G solvation = -16270.022922 eV Core-core repulsion = 13412.913688 eV Total energy + Delta-G solvation = -2857.109233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19821 -37.98223 -36.60256 -34.79055 -33.32922 -31.72340 -31.40968 -27.74189 -26.12519 -24.63955 -23.37213 -22.33620 -19.87727 -17.28757 -16.62878 -16.51747 -15.23484 -14.93908 -14.69025 -14.24912 -14.12116 -13.76843 -13.54740 -12.75552 -12.56180 -12.51706 -12.02565 -11.90096 -11.63155 -11.41930 -11.31121 -10.89047 -10.84483 -10.45402 -10.40340 -9.30489 -9.21768 -8.93744 -8.67765 -8.46434 -7.61226 -6.45805 -4.00503 0.96875 1.30987 2.02017 3.10840 3.19944 3.25407 3.50620 4.02520 4.41897 4.49002 4.73693 4.83730 4.95427 5.08423 5.23162 5.51266 5.57343 5.66437 5.85288 5.91624 6.10999 6.19507 6.72008 6.87956 6.97908 7.35019 7.45272 8.05114 8.14416 8.43219 9.06464 9.27709 9.91572 10.55914 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.045167 B = 0.005407 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.778134 B = 5177.001140 C = 5706.974600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.142 4.142 3 C 0.106 3.894 4 N -0.449 5.449 5 C 0.123 3.877 6 C 0.472 3.528 7 O -0.588 6.588 8 N -0.403 5.403 9 C 0.113 3.887 10 C -0.303 4.303 11 H 0.100 0.900 12 C 0.035 3.965 13 N -0.857 5.857 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.118 4.118 19 C -0.002 4.002 20 Cl -0.062 7.062 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.162 0.838 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.273 0.727 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -2.210 -2.314 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.054 4.054 4 N -0.160 5.160 5 C -0.015 4.015 6 C 0.260 3.740 7 O -0.474 6.474 8 N -0.117 5.117 9 C -0.031 4.031 10 C -0.431 4.431 11 H 0.118 0.882 12 C -0.171 4.171 13 N -0.494 5.494 14 Si 0.756 3.244 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.141 4.141 19 C -0.036 4.036 20 Cl -0.033 7.033 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.180 0.820 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.484 -1.828 -2.159 12.800 hybrid contribution 0.156 -0.645 -0.021 0.664 sum -12.327 -2.473 -2.180 12.761 Atomic orbital electron populations 1.20729 0.89766 1.03371 1.02729 1.20862 0.97830 0.92485 1.03417 1.22844 0.90151 0.96668 0.95692 1.68434 1.07226 1.29907 1.10477 1.21792 0.96258 0.87742 0.95750 1.17600 0.84199 0.85490 0.86665 1.90619 1.64953 1.34302 1.57507 1.43538 1.06609 1.04706 1.56849 1.21792 0.93842 0.87691 0.99757 1.19771 0.81056 1.07406 1.34905 0.88237 1.25542 1.00654 0.96493 0.94458 1.69942 1.38012 1.14464 1.26962 0.85857 0.81345 0.78995 0.78160 1.20020 1.20674 1.19028 1.21979 0.91992 1.00586 0.99496 1.21045 0.92422 0.86879 1.03243 1.98351 1.77926 1.30276 1.96730 0.90783 0.91063 0.90900 0.82044 0.93158 0.90268 0.93897 0.91711 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.67 36.00 0.35 -0.69 15 2 C -0.14 -1.93 5.91 -104.32 -0.62 -2.55 15 3 C 0.11 1.56 10.86 -17.57 -0.19 1.37 15 4 N -0.45 -8.57 5.98 -9.82 -0.06 -8.63 15 5 C 0.12 2.63 6.67 -83.03 -0.55 2.08 15 6 C 0.47 12.36 7.60 -12.26 -0.09 12.27 15 7 O -0.59 -16.93 16.17 5.31 0.09 -16.84 15 8 N -0.40 -10.79 2.97 -123.23 -0.37 -11.16 15 9 C 0.11 2.66 7.80 59.85 0.47 3.13 15 10 C -0.30 -8.47 9.05 -15.02 -0.14 -8.61 15 11 H 0.10 2.85 7.65 -52.49 -0.40 2.45 15 12 C 0.03 0.92 4.97 -17.45 -0.09 0.83 15 13 N -0.86 -22.84 11.10 55.50 0.62 -22.22 15 14 Si 0.93 20.24 29.57 -169.99 -5.03 15.21 15 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 18 C -0.12 -2.21 9.45 -38.99 -0.37 -2.58 15 19 C 0.00 -0.03 6.36 -39.20 -0.25 -0.27 15 20 Cl -0.06 -0.80 27.48 -51.86 -1.43 -2.22 15 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.07 0.67 7.01 -51.93 -0.36 0.31 15 23 H 0.07 0.57 8.09 -51.93 -0.42 0.15 15 24 H 0.16 1.79 8.06 -52.49 -0.42 1.36 15 25 H 0.05 1.19 7.44 -51.93 -0.39 0.81 15 26 H 0.08 1.96 5.94 -51.93 -0.31 1.65 15 27 H 0.04 0.92 6.64 -51.93 -0.34 0.58 15 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 29 H 0.15 2.86 7.65 -52.49 -0.40 2.46 15 LS Contribution 267.86 15.07 4.04 4.04 Total: -1.00 -30.65 267.86 -6.23 -36.88 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.61 Total: -0.03 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.48 Total: 4.97 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.19 Total: -42.00 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.09 Total: -16.84 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.43 Total: -2.22 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.65 -6.23 -36.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197287815.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.016 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds