Wall clock time and date at job start Sun Mar 29 2020 23:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38538 * 120.32495 * 2 1 4 4 N 1.31527 * 120.92955 * 180.23016 * 3 2 1 5 5 C 1.32834 * 121.65908 * 359.48493 * 4 3 2 6 6 C 1.48009 * 119.71964 * 180.24117 * 5 4 3 7 7 O 1.21566 * 119.99576 * 174.73644 * 6 5 4 8 8 N 1.34775 * 120.00342 * 354.73261 * 6 5 4 9 9 C 1.46498 * 119.99825 * 5.00551 * 8 6 5 10 10 C 1.36788 * 119.99910 * 185.00869 * 8 6 5 11 11 H 1.08000 * 120.00115 * 31.60716 * 10 8 6 12 12 C 1.39104 * 119.99396 * 211.61432 * 10 8 6 13 13 N 1.31315 * 120.00517 * 13.16359 * 12 10 8 14 14 Si 1.86800 * 119.99735 * 193.16461 * 12 10 8 15 15 H 1.48501 * 109.47123 * 89.99641 * 14 12 10 16 16 H 1.48501 * 109.47150 * 209.99934 * 14 12 10 17 17 H 1.48504 * 109.47156 * 329.99839 * 14 12 10 18 18 C 1.39316 * 120.55253 * 0.51968 * 5 4 3 19 19 C 1.38744 * 119.03814 * 359.74130 * 18 5 4 20 20 Cl 1.73603 * 120.76488 * 179.97438 * 19 18 5 21 21 H 1.08997 * 109.47153 * 89.99778 * 1 2 3 22 22 H 1.09001 * 109.47010 * 209.99641 * 1 2 3 23 23 H 1.08997 * 109.47167 * 329.99464 * 1 2 3 24 24 H 1.08001 * 119.53515 * 359.96396 * 3 2 1 25 25 H 1.09002 * 109.46937 * 63.37995 * 9 8 6 26 26 H 1.08997 * 109.47222 * 183.38106 * 9 8 6 27 27 H 1.09004 * 109.47478 * 303.37889 * 9 8 6 28 28 H 0.97001 * 120.00295 * 180.02562 * 13 12 10 29 29 H 1.08000 * 120.48301 * 179.72542 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.1958 0.0000 4 7 3.5216 1.2097 -0.0045 5 6 4.2307 0.0865 0.0009 6 6 5.7094 0.1522 0.0009 7 8 6.3630 -0.8677 0.1024 8 7 6.3310 1.3427 -0.1118 9 6 5.5470 2.5802 -0.1238 10 6 7.6940 1.3955 -0.2150 11 1 8.2301 0.5941 -0.7016 12 6 8.3894 2.4812 0.3071 13 7 7.7852 3.3203 1.1166 14 14 10.1828 2.7457 -0.1435 15 1 10.2678 3.5932 -1.3600 16 1 10.8811 3.4208 0.9799 17 1 10.8254 1.4334 -0.4087 18 6 3.5943 -1.1528 0.0008 19 6 2.2076 -1.1978 0.0004 20 17 1.3684 -2.7175 -0.0004 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6641 2.1298 -0.0006 25 1 5.0323 2.6934 0.8304 26 1 6.2115 3.4298 -0.2813 27 1 4.8140 2.5382 -0.9294 28 1 8.2701 4.0776 1.4803 29 1 4.1720 -2.0653 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197287815.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:18 Heat of formation + Delta-G solvation = -9.190351 kcal Electronic energy + Delta-G solvation = -16270.861208 eV Core-core repulsion = 13412.913688 eV Total energy + Delta-G solvation = -2857.947520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66840 -39.81136 -37.79173 -36.81175 -34.63487 -33.57238 -32.86072 -29.11681 -27.96728 -26.44834 -24.70425 -23.76393 -21.56650 -19.15657 -18.41833 -17.96125 -17.07051 -16.29752 -16.25898 -15.91444 -15.81751 -15.22653 -14.87216 -14.44186 -13.76859 -13.63060 -13.45253 -13.37295 -13.25686 -13.14887 -12.82189 -12.60703 -12.40374 -12.13119 -12.02578 -11.09159 -10.84340 -10.54844 -10.22431 -9.98329 -9.61910 -8.42945 -6.11897 -0.41430 0.00160 0.81466 1.38788 1.40869 1.54480 1.89256 2.23595 2.72606 2.82921 3.09662 3.35765 3.65289 3.73576 3.84947 4.21655 4.44206 4.59623 4.69420 4.83591 4.97050 5.04154 5.09941 5.18501 5.33904 5.41703 5.53682 6.06487 6.38311 6.77015 7.05348 7.30056 7.91305 8.58909 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.045167 B = 0.005407 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.778134 B = 5177.001140 C = 5706.974600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C 0.107 3.893 4 N -0.466 5.466 5 C 0.089 3.911 6 C 0.463 3.537 7 O -0.630 6.630 8 N -0.423 5.423 9 C 0.133 3.867 10 C -0.351 4.351 11 H 0.075 0.925 12 C 0.002 3.998 13 N -0.881 5.881 14 Si 0.999 3.001 15 H -0.258 1.258 16 H -0.270 1.270 17 H -0.273 1.273 18 C -0.123 4.123 19 C -0.008 4.008 20 Cl -0.035 7.035 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.208 0.792 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.280 0.720 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -1.426 -2.529 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.053 4.053 4 N -0.178 5.178 5 C -0.047 4.047 6 C 0.252 3.748 7 O -0.519 6.519 8 N -0.138 5.138 9 C -0.010 4.010 10 C -0.479 4.479 11 H 0.093 0.907 12 C -0.202 4.202 13 N -0.518 5.518 14 Si 0.821 3.179 15 H -0.183 1.183 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.145 4.145 19 C -0.042 4.042 20 Cl -0.005 7.005 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.225 0.775 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.345 -1.031 -2.374 15.562 hybrid contribution 0.692 -1.013 0.064 1.228 sum -14.654 -2.043 -2.310 14.975 Atomic orbital electron populations 1.20929 0.85967 1.05190 1.04575 1.21429 1.00249 0.91084 0.98505 1.23607 0.88572 0.99027 0.94104 1.68241 1.09518 1.29176 1.10825 1.21039 0.93822 0.89655 1.00218 1.18390 0.86590 0.84754 0.85046 1.90547 1.66929 1.35596 1.58838 1.43750 1.06611 1.05683 1.57739 1.21638 0.93282 0.86034 1.00030 1.19756 0.82229 1.08289 1.37595 0.90689 1.26359 1.04770 0.95445 0.93607 1.70002 1.39684 1.14824 1.27252 0.84871 0.75809 0.78627 0.78630 1.18305 1.19485 1.19780 1.21859 0.93695 0.99064 0.99896 1.21131 0.91330 0.88945 1.02791 1.98363 1.76900 1.28742 1.96535 0.88578 0.90477 0.87976 0.77547 0.93769 0.91787 0.91957 0.91034 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.67 71.23 0.69 -0.78 15 2 C -0.11 -2.52 5.91 -19.67 -0.12 -2.64 15 3 C 0.11 2.77 10.86 84.81 0.92 3.69 15 4 N -0.47 -17.33 5.98 -185.00 -1.11 -18.44 15 5 C 0.09 3.89 6.67 41.84 0.28 4.17 15 6 C 0.46 25.58 7.60 86.84 0.66 26.24 15 7 O -0.63 -38.79 16.17 -3.92 -0.06 -38.85 15 8 N -0.42 -23.82 2.97 -662.05 -1.97 -25.79 15 9 C 0.13 6.45 7.80 127.77 1.00 7.45 15 10 C -0.35 -20.72 9.05 84.13 0.76 -19.96 15 11 H 0.08 4.64 7.65 -2.91 -0.02 4.62 15 12 C 0.00 0.12 4.97 84.98 0.42 0.55 15 13 N -0.88 -47.92 11.10 21.69 0.24 -47.68 15 14 Si 1.00 42.36 29.57 68.60 2.03 44.39 15 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 16 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 18 C -0.12 -4.62 9.45 22.65 0.21 -4.40 15 19 C -0.01 -0.21 6.36 22.52 0.14 -0.07 15 20 Cl -0.03 -0.80 27.48 -2.72 -0.07 -0.88 15 21 H 0.10 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.08 1.03 7.01 -2.39 -0.02 1.01 15 23 H 0.10 0.90 8.09 -2.39 -0.02 0.88 15 24 H 0.21 3.42 8.06 -2.91 -0.02 3.39 15 25 H 0.04 2.14 7.44 -2.39 -0.02 2.12 15 26 H 0.06 3.25 5.94 -2.39 -0.01 3.24 15 27 H 0.06 2.70 6.64 -2.39 -0.02 2.69 15 28 H 0.28 13.96 8.31 -92.71 -0.77 13.19 15 29 H 0.14 5.44 7.65 -2.91 -0.02 5.42 15 Total: -1.00 -71.41 267.86 5.21 -66.21 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.18 Total: 6.80 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 4.97 Total: 14.24 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -2.83 Total: -91.90 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.06 Total: -38.85 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.88 kcal Total: -71.41 5.21 -66.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197287815.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.016 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds