Wall clock time and date at job start Sun Mar 29 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46973 * 2 1 4 4 C 1.52994 * 109.47403 * 120.00305 * 2 1 3 5 5 C 1.52993 * 109.47251 * 295.00104 * 4 2 1 6 6 N 1.46900 * 109.47345 * 180.02562 * 5 4 2 7 7 C 1.47482 * 110.99883 * 265.96898 * 6 5 4 8 8 C 1.53503 * 87.93372 * 221.29536 * 7 6 5 9 9 C 1.50702 * 114.17277 * 139.66846 * 8 7 6 10 10 H 1.07998 * 120.00360 * 266.15877 * 9 8 7 11 11 C 1.37885 * 119.99742 * 86.16119 * 9 8 7 12 12 N 1.31511 * 119.99853 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99885 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47111 * 59.99868 * 13 11 9 15 15 H 1.48495 * 109.46938 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46912 * 299.99750 * 13 11 9 17 17 C 1.47478 * 111.00339 * 169.99895 * 6 5 4 18 18 C 1.53002 * 109.46728 * 240.00425 * 2 1 3 19 19 C 1.53004 * 109.47320 * 81.86812 * 18 2 1 20 20 C 1.53000 * 109.47186 * 65.50443 * 19 18 2 21 21 C 1.52997 * 109.47289 * 185.50453 * 19 18 2 22 22 C 1.53005 * 109.46599 * 305.50591 * 19 18 2 23 23 H 1.08997 * 109.47340 * 51.98607 * 1 2 3 24 24 H 1.09000 * 109.47163 * 171.99301 * 1 2 3 25 25 H 1.09002 * 109.46695 * 291.98622 * 1 2 3 26 26 H 1.09005 * 109.47071 * 55.00373 * 4 2 1 27 27 H 1.09003 * 109.47303 * 174.99418 * 4 2 1 28 28 H 1.09007 * 109.47053 * 299.99647 * 5 4 2 29 29 H 1.08994 * 109.47569 * 60.00080 * 5 4 2 30 30 H 1.09000 * 113.47362 * 336.06178 * 7 6 5 31 31 H 1.08996 * 113.47748 * 106.52589 * 7 6 5 32 32 H 1.09000 * 114.34442 * 272.36409 * 8 7 6 33 33 H 0.96997 * 120.00111 * 179.97438 * 12 11 9 34 34 H 1.08998 * 113.47370 * 253.47022 * 17 6 5 35 35 H 1.09003 * 113.47370 * 23.93342 * 17 6 5 36 36 H 1.09004 * 109.47301 * 201.86093 * 18 2 1 37 37 H 1.08996 * 109.47214 * 321.86571 * 18 2 1 38 38 H 1.08998 * 109.47282 * 60.00415 * 20 19 18 39 39 H 1.09002 * 109.46866 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47080 * 300.00000 * 20 19 18 41 41 H 1.09009 * 109.47137 * 60.00269 * 21 19 18 42 42 H 1.09004 * 109.47204 * 179.97438 * 21 19 18 43 43 H 1.09000 * 109.47137 * 300.00173 * 21 19 18 44 44 H 1.08998 * 109.47323 * 71.80708 * 22 19 18 45 45 H 1.09003 * 109.46541 * 191.80295 * 22 19 18 46 46 H 1.08991 * 109.47200 * 311.80168 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 0.0688 2.4952 6 7 2.1256 -0.6235 3.6946 7 6 1.0901 -1.5140 4.2512 8 6 1.5098 -1.0370 5.6486 9 6 0.3587 -0.8057 6.5933 10 1 -0.0699 0.1807 6.6911 11 6 -0.1472 -1.8536 7.3330 12 7 0.3744 -3.0549 7.2136 13 14 -1.5746 -1.5672 8.5035 14 1 -2.7469 -1.0669 7.7416 15 1 -1.9287 -2.8439 9.1740 16 1 -1.1830 -0.5630 9.5252 17 6 1.9658 0.2197 4.8940 18 6 2.0399 -0.7212 -1.2493 19 6 2.0175 0.2411 -2.4386 20 6 3.0207 1.3713 -2.1992 21 6 2.3959 -0.5150 -3.7137 22 6 0.6134 0.8295 -2.5921 23 1 -0.3634 0.6329 -0.8096 24 1 -0.3633 -1.0176 -0.1431 25 1 -0.3633 0.3848 0.9530 26 1 1.6055 -1.7199 1.2950 27 1 3.1264 -0.7996 1.2054 28 1 2.0700 1.0674 2.4494 29 1 0.5491 0.1470 2.5390 30 1 0.0754 -1.2229 3.9797 31 1 1.2870 -2.5716 4.0761 32 1 2.3233 -1.6101 6.0935 33 1 0.0188 -3.7920 7.7342 34 1 2.9050 0.6314 5.2635 35 1 1.1848 0.9735 4.7939 36 1 3.0603 -1.0650 -1.0795 37 1 1.3989 -1.5767 -1.4621 38 1 4.0209 0.9522 -2.0899 39 1 3.0044 2.0571 -3.0463 40 1 2.7511 1.9100 -1.2908 41 1 1.6811 -1.3201 -3.8844 42 1 2.3795 0.1705 -4.5611 43 1 3.3961 -0.9342 -3.6043 44 1 0.4251 1.5358 -1.7836 45 1 0.5382 1.3448 -3.5497 46 1 -0.1231 0.0271 -2.5525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208657435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:10 Heat of formation + Delta-G solvation = 3.290370 kcal Electronic energy + Delta-G solvation = -19286.843595 eV Core-core repulsion = 16597.486404 eV Total energy + Delta-G solvation = -2689.357190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.25195 -38.51936 -34.72576 -32.58356 -30.15694 -28.20906 -27.45922 -26.77654 -26.21490 -24.71728 -24.10906 -21.43922 -19.81055 -18.77836 -18.53236 -16.57149 -15.80155 -15.04329 -14.80849 -14.42989 -14.39837 -14.12326 -13.84561 -13.56056 -13.15286 -12.86366 -12.49191 -12.21671 -12.05655 -11.89029 -11.62100 -11.56433 -11.51185 -11.39564 -11.05455 -10.95771 -10.85398 -10.66752 -10.59189 -10.43678 -10.27395 -10.09962 -9.95745 -9.54042 -9.12315 -8.88087 -8.41010 -7.89965 -6.03115 -4.07534 3.31065 3.36078 3.38246 4.41246 4.53094 4.67985 4.69613 4.96151 5.09089 5.15449 5.25916 5.35134 5.42943 5.45552 5.48419 5.55300 5.61299 5.67859 5.73062 5.80767 5.85750 5.87096 5.92857 5.94834 5.99100 6.10574 6.12042 6.17948 6.26381 6.29020 6.33285 6.36042 6.45026 6.54433 6.63597 6.66786 6.72630 6.85983 7.19115 7.28413 7.75356 7.94990 8.16940 8.40806 8.95328 9.57060 11.06516 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042352 B = 0.003543 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.969684 B = 7901.322571 C = 8054.200597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.102 4.102 5 C 0.021 3.979 6 N -0.487 5.487 7 C 0.006 3.994 8 C 0.041 3.959 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.006 4.006 18 C -0.104 4.104 19 C -0.070 4.070 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.147 4.147 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 6.388 -19.071 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.140 4.140 5 C -0.108 4.108 6 N -0.209 5.209 7 C -0.123 4.123 8 C 0.022 3.978 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.070 4.070 20 C -0.201 4.201 21 C -0.198 4.198 22 C -0.203 4.203 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.795 5.940 -19.233 20.323 hybrid contribution -1.655 0.396 0.704 1.842 sum 1.140 6.336 -18.529 19.615 Atomic orbital electron populations 1.22450 0.95647 1.02089 1.02431 1.21196 0.95772 0.99799 0.94224 0.91143 1.21495 1.00796 0.99115 0.92607 1.22675 0.98125 0.97274 0.92748 1.68805 1.39365 1.12139 1.00575 1.24061 0.92327 0.97105 0.98764 1.20090 0.96415 0.90467 0.90858 1.21018 1.15899 0.95117 1.23495 0.92556 1.25019 0.96879 0.95209 0.96504 1.69958 1.41319 1.00124 1.41000 0.86682 0.82798 0.77451 0.81212 1.20261 1.21233 1.20153 1.23972 0.98980 0.98111 0.92400 1.21759 1.01284 0.97533 0.93552 1.20553 0.95520 0.95665 0.95218 1.21944 0.98746 0.97907 1.01468 1.21880 1.01254 0.99933 0.96752 1.22234 0.96140 1.00845 1.01118 0.91155 0.93042 0.92683 0.92256 0.91872 0.92557 0.94135 0.93048 0.92047 0.91874 0.92831 0.92211 0.93051 0.91990 0.92059 0.92751 0.93107 0.92190 0.92811 0.92979 0.92783 0.91543 0.93472 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.26 37.16 0.31 -1.67 16 2 C -0.09 -1.07 1.89 -90.62 -0.17 -1.24 16 3 H 0.07 0.82 5.92 -51.93 -0.31 0.51 16 4 C -0.10 -1.51 4.95 -26.74 -0.13 -1.64 16 5 C 0.02 0.36 4.58 -3.83 -0.02 0.34 16 6 N -0.49 -10.17 6.33 -244.66 -1.55 -11.72 16 7 C 0.01 0.15 7.28 -7.55 -0.05 0.10 16 8 C 0.04 1.05 3.77 -91.25 -0.34 0.70 16 9 C -0.52 -14.32 8.82 -34.44 -0.30 -14.62 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 12 N -0.89 -25.89 13.26 55.43 0.74 -25.16 16 13 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 18 C -0.10 -1.08 3.98 -26.73 -0.11 -1.19 16 19 C -0.07 -0.62 0.80 -154.51 -0.12 -0.75 16 20 C -0.14 -1.26 8.25 37.16 0.31 -0.95 16 21 C -0.14 -1.15 8.44 37.16 0.31 -0.83 16 22 C -0.15 -1.26 6.68 37.16 0.25 -1.01 16 23 H 0.07 0.70 4.06 -51.93 -0.21 0.49 16 24 H 0.05 0.61 7.95 -51.93 -0.41 0.20 16 25 H 0.05 0.71 6.23 -51.93 -0.32 0.39 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 28 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.04 0.72 5.57 -51.93 -0.29 0.43 16 30 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 36 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 37 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.55 6.25 -51.93 -0.32 0.23 16 41 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.59 5.93 -51.93 -0.31 0.28 16 45 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 46 H 0.06 0.51 7.24 -51.93 -0.38 0.13 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -28.09 344.52 -9.64 -37.72 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.76 Total: -1.07 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -0.23 Total: -21.18 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.81 Total: -36.88 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.09 -9.64 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208657435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds