Wall clock time and date at job start Sun Mar 29 2020 23:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86794 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47273 * 120.00340 * 3 2 1 6 6 H 1.48502 * 109.47039 * 240.00156 * 3 2 1 7 7 C 1.40306 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99522 * 159.52204 * 7 2 1 9 9 C 1.40540 * 120.00428 * 339.52682 * 7 2 1 10 10 C 1.44190 * 123.71046 * 335.41324 * 9 7 2 11 11 C 1.32767 * 114.42694 * 179.79947 * 10 9 7 12 12 S 1.75471 * 111.36085 * 0.46222 * 11 10 9 13 13 C 1.39539 * 123.71469 * 155.71312 * 9 7 2 14 14 C 1.46234 * 125.23118 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00067 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00045 * 179.97438 * 14 13 9 17 17 C 1.46502 * 120.00062 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47432 * 179.97438 * 17 16 14 19 19 N 1.34768 * 120.00339 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99775 * 0.02562 * 18 17 16 21 21 H 0.96997 * 119.99920 * 174.00076 * 1 2 3 22 22 H 1.07997 * 122.78554 * 0.03152 * 10 9 7 23 23 H 1.08002 * 124.31411 * 180.19423 * 11 10 9 24 24 H 0.96998 * 119.99831 * 359.97438 * 16 14 13 25 25 H 1.09004 * 109.47182 * 299.99641 * 17 16 14 26 26 H 1.09000 * 109.47125 * 59.99751 * 17 16 14 27 27 H 0.96997 * 120.00353 * 359.97438 * 19 18 17 28 28 H 0.97000 * 120.00347 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2755 2.7465 -0.0006 5 1 3.0942 1.6964 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0368 -1.2448 -0.3267 9 6 1.3718 -2.3936 0.4268 10 6 0.2460 -2.4146 1.3275 11 6 -0.2133 -3.6292 1.6040 12 16 0.7183 -4.8675 0.7809 13 6 1.7640 -3.6725 0.0296 14 6 2.8753 -3.9721 -0.8724 15 8 3.5409 -3.0662 -1.3402 16 7 3.1629 -5.2510 -1.1859 17 6 4.2759 -5.5511 -2.0900 18 6 4.3848 -7.0427 -2.2749 19 7 5.3445 -7.5549 -3.0704 20 8 3.6088 -7.7823 -1.7077 21 1 -0.4850 -0.8354 -0.0878 22 1 -0.1898 -1.5166 1.7398 23 1 -1.0506 -3.8295 2.2561 24 1 2.6329 -5.9727 -0.8128 25 1 4.0979 -5.0771 -3.0552 26 1 5.2035 -5.1695 -1.6634 27 1 5.9649 -6.9634 -3.5244 28 1 5.4144 -8.5150 -3.1898 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349810171.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:34 Heat of formation + Delta-G solvation = -91.127156 kcal Electronic energy + Delta-G solvation = -15985.225395 eV Core-core repulsion = 13125.768536 eV Total energy + Delta-G solvation = -2859.456860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97962 -39.82537 -38.22528 -35.18490 -34.88270 -34.78835 -31.07272 -29.30571 -27.08913 -24.32599 -22.25581 -21.63967 -20.89404 -19.90120 -18.44116 -18.23377 -17.44490 -16.78533 -16.47738 -16.19034 -15.72327 -15.48576 -15.40110 -14.89202 -14.42613 -13.94926 -13.83120 -13.60318 -13.16800 -12.74134 -12.52630 -12.01113 -11.86003 -11.50594 -11.29497 -10.98283 -10.79161 -10.53628 -10.09475 -9.67775 -9.24188 -9.15853 -6.56032 0.17360 1.19954 1.40340 1.41993 1.49609 1.67224 1.81987 1.89844 2.11767 2.27465 2.47250 2.73497 3.14635 3.87045 4.18887 4.28878 4.32239 4.59783 4.91582 5.17254 5.32563 5.35808 5.50448 5.79315 5.85674 5.91636 6.30398 6.47779 6.59599 6.82992 7.19434 7.59772 7.82643 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.006563 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.880636 B = 4265.594836 C = 5292.974570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.002 3.998 3 Si 1.121 2.879 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.086 0.914 9 C 0.091 3.909 10 C -0.171 4.171 11 C -0.167 4.167 12 S 0.015 5.985 13 C -0.473 4.473 14 C 0.593 3.407 15 O -0.596 6.596 16 N -0.735 5.735 17 C 0.101 3.899 18 C 0.520 3.480 19 N -0.821 5.821 20 O -0.583 6.583 21 H 0.290 0.710 22 H 0.131 0.869 23 H 0.184 0.816 24 H 0.402 0.598 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.422 0.578 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 -6.971 -3.135 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.218 4.218 3 Si 0.936 3.064 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.204 4.204 11 C -0.302 4.302 12 S 0.272 5.728 13 C -0.592 4.592 14 C 0.390 3.610 15 O -0.482 6.482 16 N -0.390 5.390 17 C -0.026 4.026 18 C 0.304 3.696 19 N -0.387 5.387 20 O -0.463 6.463 21 H 0.104 0.896 22 H 0.149 0.851 23 H 0.201 0.799 24 H 0.238 0.762 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.254 0.746 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.975 -6.654 -3.044 9.447 hybrid contribution 0.131 -0.836 -0.135 0.856 sum 6.106 -7.490 -3.179 10.173 Atomic orbital electron populations 1.70527 1.08644 1.33814 1.27913 1.28816 0.95770 1.07599 0.89608 0.82957 0.74834 0.69305 0.79257 1.18346 1.18222 1.19034 1.21009 1.01477 0.92997 1.33758 0.89599 1.18352 0.90626 0.92707 0.90320 1.21481 0.99330 0.98028 1.01589 1.25495 1.04366 0.95635 1.04677 1.82712 1.29138 1.10638 1.50357 1.22916 1.15321 0.96039 1.24928 1.16898 0.82754 0.81552 0.79766 1.90617 1.53824 1.46312 1.57479 1.45476 1.35064 1.07534 1.50945 1.21081 0.92421 0.92447 0.96668 1.20470 0.80557 0.90230 0.78340 1.43442 1.33539 1.12889 1.48797 1.90731 1.44000 1.61792 1.49744 0.89643 0.85110 0.79857 0.76160 0.88023 0.87836 0.74611 0.75249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.19 12.49 21.89 0.27 -39.91 15 2 C 0.00 0.08 5.24 85.37 0.45 0.53 15 3 Si 1.12 42.70 29.98 68.60 2.06 44.76 15 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 5 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 6 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 7 C -0.46 -25.80 8.44 23.33 0.20 -25.60 15 8 H 0.09 5.10 6.13 -2.91 -0.02 5.08 15 9 C 0.09 4.95 5.40 -20.89 -0.11 4.84 15 10 C -0.17 -8.17 8.19 22.61 0.19 -7.99 15 11 C -0.17 -6.89 11.07 66.64 0.74 -6.15 15 12 S 0.01 0.64 22.25 -56.49 -1.26 -0.62 15 13 C -0.47 -24.74 6.51 24.66 0.16 -24.58 15 14 C 0.59 30.14 7.76 86.32 0.67 30.81 15 15 O -0.60 -33.17 14.46 -4.55 -0.07 -33.24 15 16 N -0.74 -30.23 5.52 -471.21 -2.60 -32.83 15 17 C 0.10 3.07 6.15 85.63 0.53 3.59 15 18 C 0.52 13.63 8.17 87.66 0.72 14.35 15 19 N -0.82 -11.73 8.87 -173.54 -1.54 -13.27 15 20 O -0.58 -20.41 16.50 -3.04 -0.05 -20.46 15 21 H 0.29 15.24 6.23 -92.71 -0.58 14.66 15 22 H 0.13 6.16 6.79 -2.91 -0.02 6.14 15 23 H 0.18 5.90 8.06 -2.91 -0.02 5.87 15 24 H 0.40 16.56 6.52 -92.71 -0.60 15.96 15 25 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 27 H 0.42 3.23 8.83 -92.71 -0.82 2.41 15 28 H 0.41 4.68 8.93 -92.71 -0.83 3.85 15 Total: -1.00 -71.80 266.10 -0.46 -72.27 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.81 Total: 33.50 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.53 Total: -10.20 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.87 Total: -86.02 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.12 Total: -53.70 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.06 Total: 44.76 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.26 Total: -0.62 kcal Total: -71.80 -0.46 -72.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349810171.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.860 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds