Wall clock time and date at job start Mon Mar 30 2020 00:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00123 * 2 1 4 4 H 1.48494 * 109.47257 * 265.54452 * 3 2 1 5 5 H 1.48504 * 109.46905 * 25.54685 * 3 2 1 6 6 H 1.48503 * 109.47056 * 145.54516 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99680 * 353.38685 * 7 2 1 9 9 C 1.50698 * 120.00609 * 173.37951 * 7 2 1 10 10 H 1.09000 * 109.46981 * 55.37586 * 9 7 2 11 11 O 1.45205 * 109.46804 * 295.37947 * 9 7 2 12 12 C 1.34231 * 116.99531 * 149.99854 * 11 9 7 13 13 O 1.20820 * 120.00540 * 359.97438 * 12 11 9 14 14 C 1.50709 * 119.99700 * 179.97438 * 12 11 9 15 15 H 1.08997 * 115.54761 * 325.58170 * 14 12 11 16 16 C 1.52996 * 117.49658 * 111.25435 * 14 12 11 17 17 C 1.52999 * 117.49834 * 179.91326 * 14 12 11 18 18 H 1.08993 * 117.49752 * 145.02241 * 17 14 12 19 19 F 1.39905 * 117.49640 * 0.02562 * 17 14 12 20 20 C 1.50699 * 109.47507 * 175.37835 * 9 7 2 21 21 C 1.34511 * 125.78511 * 264.74145 * 20 9 7 22 22 C 1.41390 * 106.83633 * 179.97438 * 21 20 9 23 23 C 1.34512 * 106.84159 * 0.22983 * 22 21 20 24 24 O 1.34300 * 108.41912 * 359.62823 * 23 22 21 25 25 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 26 26 H 1.09008 * 117.49517 * 214.97742 * 16 14 12 27 27 H 1.08999 * 117.49999 * 359.97438 * 16 14 12 28 28 H 1.07993 * 126.58585 * 359.94349 * 21 20 9 29 29 H 1.07997 * 126.57925 * 179.97438 * 22 21 20 30 30 H 1.08001 * 125.78980 * 179.77173 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5909 1.9921 -1.3958 5 1 1.4027 2.6780 0.6038 6 1 3.4965 1.4692 0.7921 7 6 2.0046 -1.1940 -0.0005 8 1 1.4699 -2.1263 0.1068 9 6 3.5040 -1.1984 -0.1510 10 1 3.9483 -0.5681 0.6194 11 8 3.8604 -0.6847 -1.4616 12 6 5.0372 -0.0478 -1.5670 13 8 5.7459 0.0769 -0.5964 14 6 5.4746 0.5119 -2.8962 15 1 5.1756 -0.0657 -3.7708 16 6 5.5267 2.0343 -3.0389 17 6 6.8252 1.2287 -2.9509 18 1 7.4145 1.1230 -3.8617 19 9 7.5599 1.3138 -1.7633 20 6 4.0194 -2.6071 -0.0064 21 6 4.4897 -3.1603 1.1259 22 6 4.8617 -4.4872 0.8096 23 6 4.6012 -4.6638 -0.4981 24 8 4.0864 -3.5233 -0.9861 25 1 -0.4850 0.8401 0.0004 26 1 5.2622 2.4583 -4.0077 27 1 5.2441 2.6311 -2.1717 28 1 4.5685 -2.6825 2.0912 29 1 5.2792 -5.2174 1.4871 30 1 4.7743 -5.5698 -1.0599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526993347.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:45 Heat of formation + Delta-G solvation = -84.052934 kcal Electronic energy + Delta-G solvation = -18928.981739 eV Core-core repulsion = 15607.158808 eV Total energy + Delta-G solvation = -3321.822931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.42343 -41.86861 -39.67389 -36.52254 -35.22658 -33.06188 -32.32115 -30.56542 -27.21243 -24.95828 -22.75150 -22.42709 -21.11666 -20.10171 -19.44345 -17.72272 -17.49031 -16.81377 -16.10450 -15.83267 -15.38064 -15.06695 -14.54564 -14.39694 -14.24364 -13.35397 -13.11256 -12.73902 -12.43702 -12.15881 -12.13622 -12.05354 -11.73147 -11.32357 -10.95530 -10.46570 -10.21767 -10.14367 -9.96006 -9.77225 -9.63562 -9.27800 -8.91878 -7.76617 -6.47879 -4.56841 2.40238 2.60432 3.07740 3.16087 3.22740 3.27124 3.38035 3.66047 3.73815 4.08120 4.14632 4.57474 4.73950 4.91060 5.07994 5.33204 5.47138 5.58573 5.63082 5.76876 5.90544 5.98754 6.28716 6.40401 6.53782 6.70788 7.05762 7.10496 7.40795 7.86279 8.05853 8.54176 8.60953 9.09262 10.60755 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.011416 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.284504 B = 2452.113068 C = 3861.034452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.097 3.903 3 Si 0.865 3.135 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.512 4.512 8 H 0.093 0.907 9 C 0.253 3.747 10 H 0.081 0.919 11 O -0.346 6.346 12 C 0.470 3.530 13 O -0.506 6.506 14 C -0.184 4.184 15 H 0.146 0.854 16 C -0.166 4.166 17 C 0.049 3.951 18 H 0.143 0.857 19 F -0.165 7.165 20 C 0.029 3.971 21 C -0.224 4.224 22 C -0.212 4.212 23 C -0.069 4.069 24 O -0.166 6.166 25 H 0.275 0.725 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 0.109 -6.160 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.112 4.112 3 Si 0.690 3.310 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.548 4.548 8 H 0.111 0.889 9 C 0.202 3.798 10 H 0.099 0.901 11 O -0.263 6.263 12 C 0.312 3.688 13 O -0.395 6.395 14 C -0.204 4.204 15 H 0.164 0.836 16 C -0.204 4.204 17 C 0.012 3.988 18 H 0.161 0.839 19 F -0.145 7.145 20 C -0.023 4.023 21 C -0.244 4.244 22 C -0.231 4.231 23 C -0.137 4.137 24 O -0.062 6.062 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.127 0.873 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.200 0.267 -6.086 11.881 hybrid contribution 0.341 0.535 0.359 0.729 sum 10.542 0.803 -5.728 12.024 Atomic orbital electron populations 1.69886 1.06381 1.28278 1.44938 1.24977 0.94790 0.99408 0.92052 0.86965 0.80972 0.83118 0.79959 1.18838 1.20542 1.18091 1.20871 0.87149 0.96021 1.50729 0.88930 1.19820 0.96436 0.82419 0.81154 0.90135 1.87090 1.33868 1.64484 1.40829 1.22393 0.81136 0.76325 0.88904 1.90648 1.54080 1.55738 1.39066 1.22668 1.01960 0.97441 0.98288 0.83606 1.23724 0.99153 0.91851 1.05633 1.22111 0.85995 1.04051 0.86603 0.83947 1.92894 1.77518 1.96227 1.47884 1.23174 0.99955 0.92471 0.86652 1.21424 1.07927 0.95469 0.99538 1.21691 1.07609 0.97704 0.96112 1.23857 1.04573 0.90119 0.95118 1.84068 1.63801 1.19905 1.38390 0.91530 0.85818 0.87270 0.83841 0.84114 0.78895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 13.96 55.43 0.77 -24.11 16 2 C 0.10 2.71 5.47 -17.82 -0.10 2.61 16 3 Si 0.86 21.16 26.02 -169.99 -4.42 16.74 16 4 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.38 6.51 56.52 0.37 -6.01 16 7 C -0.51 -14.45 9.30 -34.44 -0.32 -14.77 16 8 H 0.09 2.80 7.99 -52.48 -0.42 2.39 16 9 C 0.25 6.47 1.72 -29.04 -0.05 6.42 16 10 H 0.08 2.12 5.75 -51.93 -0.30 1.82 16 11 O -0.35 -8.46 8.56 -42.01 -0.36 -8.82 16 12 C 0.47 10.34 7.04 36.01 0.25 10.59 16 13 O -0.51 -12.27 14.37 -18.74 -0.27 -12.54 16 14 C -0.18 -2.94 6.30 -91.77 -0.58 -3.51 16 15 H 0.15 1.89 8.14 -51.93 -0.42 1.47 16 16 C -0.17 -2.20 10.22 -26.70 -0.27 -2.48 16 17 C 0.05 0.65 7.83 -26.69 -0.21 0.44 16 18 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 19 F -0.17 -2.91 15.72 2.25 0.04 -2.87 16 20 C 0.03 0.68 6.13 -35.63 -0.22 0.46 16 21 C -0.22 -4.75 10.81 -39.70 -0.43 -5.18 16 22 C -0.21 -3.79 10.91 -39.70 -0.43 -4.22 16 23 C -0.07 -1.22 12.09 29.42 0.36 -0.86 16 24 O -0.17 -3.69 10.63 2.20 0.02 -3.67 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 27 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 28 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 29 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -33.30 276.58 -4.90 -38.19 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.85 Total: 3.41 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.00 Total: -10.50 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.77 Total: -24.11 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.61 Total: -25.03 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.42 Total: 16.74 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.30 -4.90 -38.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526993347.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.859 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds