Wall clock time and date at job start Sun Mar 29 2020 23:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 C 1.53000 * 109.46947 * 120.00438 * 2 1 3 5 5 C 1.52994 * 109.47321 * 175.00007 * 4 2 1 6 6 C 1.53001 * 109.47481 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.67340 * 56.77875 * 6 5 4 8 8 C 1.54886 * 110.75634 * 293.54461 * 6 5 4 9 9 C 1.54260 * 104.19873 * 203.73998 * 8 6 5 10 10 C 1.53873 * 106.59816 * 23.61213 * 9 8 6 11 11 H 1.09007 * 110.03482 * 240.66854 * 10 9 8 12 12 N 1.46901 * 110.03576 * 119.28233 * 10 9 8 13 13 C 1.46902 * 110.99856 * 86.45393 * 12 10 9 14 14 H 1.09002 * 109.47228 * 325.00202 * 13 12 10 15 15 C 1.53001 * 109.47251 * 84.99986 * 13 12 10 16 16 C 1.50697 * 109.47206 * 205.00096 * 13 12 10 17 17 H 1.08000 * 119.99640 * 354.36408 * 16 13 12 18 18 C 1.37880 * 119.99965 * 174.36425 * 16 13 12 19 19 N 1.31513 * 120.00002 * 156.85224 * 18 16 13 20 20 Si 1.86801 * 119.99932 * 336.84836 * 18 16 13 21 21 H 1.48500 * 109.46756 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.46968 * 300.00224 * 20 18 16 23 23 H 1.48497 * 109.46983 * 60.00217 * 20 18 16 24 24 C 1.54265 * 106.59868 * 359.97438 * 10 9 8 25 25 H 1.09002 * 109.46969 * 300.00352 * 1 2 3 26 26 H 1.09008 * 109.46821 * 59.99955 * 1 2 3 27 27 H 1.08995 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46969 * 239.99648 * 2 1 3 29 29 H 1.09000 * 109.47138 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47097 * 299.99765 * 3 2 1 31 31 H 1.09002 * 109.47343 * 59.99877 * 3 2 1 32 32 H 1.08998 * 109.47831 * 54.99430 * 4 2 1 33 33 H 1.09007 * 109.47033 * 294.99870 * 4 2 1 34 34 H 1.09003 * 109.47518 * 59.99630 * 5 4 2 35 35 H 1.09005 * 109.47198 * 299.99424 * 5 4 2 36 36 H 1.09002 * 110.48845 * 85.06102 * 8 6 5 37 37 H 1.09002 * 110.48666 * 322.42464 * 8 6 5 38 38 H 1.09003 * 110.03430 * 264.32645 * 9 8 6 39 39 H 1.08999 * 110.03450 * 142.89505 * 9 8 6 40 40 H 1.00899 * 111.00295 * 210.40530 * 12 10 9 41 41 H 1.08994 * 109.47265 * 173.10019 * 15 13 12 42 42 H 1.09002 * 109.47128 * 293.10770 * 15 13 12 43 43 H 1.09001 * 109.47164 * 53.10047 * 15 13 12 44 44 H 0.97001 * 120.00024 * 354.92753 * 19 18 16 45 45 H 1.09003 * 110.48553 * 95.06831 * 24 10 9 46 46 H 1.09003 * 110.48958 * 217.71336 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5647 -0.8312 1.1880 6 6 4.0748 -1.5520 2.4375 7 1 3.6082 -2.5323 2.5336 8 6 3.8235 -0.6979 3.7049 9 6 4.8724 -1.2040 4.7164 10 6 6.0138 -1.8252 3.8923 11 1 6.1255 -2.8797 4.1446 12 7 7.2700 -1.1098 4.1533 13 6 7.9552 -1.6613 5.3299 14 1 7.2159 -1.9780 6.0656 15 6 8.8034 -2.8633 4.9094 16 6 8.8447 -0.6055 5.9340 17 1 8.9665 0.3462 5.4382 18 6 9.5030 -0.8545 7.1197 19 7 10.5909 -0.1803 7.4219 20 14 8.8494 -2.1494 8.2967 21 1 9.7312 -2.2246 9.4891 22 1 7.4736 -1.7844 8.7199 23 1 8.8242 -3.4691 7.6164 24 6 5.6182 -1.6753 2.4087 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7199 1.2952 33 1 1.7516 -0.1584 2.1370 34 1 3.9994 0.1673 1.1421 35 1 3.8531 -1.3942 0.3003 36 1 2.8155 -0.8657 4.0844 37 1 3.9799 0.3592 3.4898 38 1 4.4297 -1.9573 5.3681 39 1 5.2507 -0.3718 5.3101 40 1 7.8714 -1.1278 3.3433 41 1 9.4054 -3.1966 5.7546 42 1 8.1501 -3.6738 4.5863 43 1 9.4590 -2.5756 4.0874 44 1 10.9719 0.4389 6.7798 45 1 6.0643 -0.7761 1.9839 46 1 5.9204 -2.5563 1.8424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657903372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:08 Heat of formation + Delta-G solvation = -46.377809 kcal Electronic energy + Delta-G solvation = -19244.089236 eV Core-core repulsion = 16552.578271 eV Total energy + Delta-G solvation = -2691.510964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.82221 -36.90152 -35.08150 -32.45744 -31.05515 -28.99742 -27.83181 -27.36494 -25.48528 -24.55064 -22.91557 -20.42601 -20.09719 -19.69089 -18.84622 -17.35115 -16.02654 -15.33314 -15.04279 -14.31852 -14.24028 -14.00208 -13.65081 -13.41578 -12.95532 -12.75179 -12.52743 -12.36159 -12.14679 -11.95308 -11.85101 -11.55661 -11.40703 -11.22032 -10.88343 -10.87271 -10.65266 -10.57613 -10.50783 -10.39596 -10.24747 -10.20207 -10.02991 -9.91113 -9.67750 -8.97193 -8.11128 -7.34797 -6.37325 -3.93551 3.42155 3.47455 3.64454 4.50676 4.56155 4.69382 4.74189 4.85397 4.95438 4.98362 5.23142 5.27971 5.38682 5.40209 5.44118 5.50930 5.56432 5.64276 5.69775 5.77304 5.81813 5.83445 5.88208 5.93639 5.99453 6.00297 6.09364 6.17113 6.25033 6.27898 6.32382 6.36247 6.39583 6.44181 6.56080 6.65932 6.71574 6.76392 7.00224 7.26522 7.93724 8.37595 8.46945 8.53613 9.09825 9.70661 10.99344 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.042325 B = 0.003720 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.387939 B = 7524.255030 C = 7563.886738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.090 4.090 7 H 0.069 0.931 8 C -0.111 4.111 9 C -0.117 4.117 10 C 0.081 3.919 11 H 0.034 0.966 12 N -0.668 5.668 13 C 0.189 3.811 14 H 0.025 0.975 15 C -0.176 4.176 16 C -0.587 4.587 17 H 0.063 0.937 18 C 0.033 3.967 19 N -0.904 5.904 20 Si 1.035 2.965 21 H -0.286 1.286 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.120 4.120 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.327 0.673 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.042 0.958 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 -2.573 -13.759 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.109 4.109 7 H 0.088 0.912 8 C -0.149 4.149 9 C -0.155 4.155 10 C -0.030 4.030 11 H 0.052 0.948 12 N -0.298 5.298 13 C 0.080 3.920 14 H 0.043 0.957 15 C -0.235 4.235 16 C -0.625 4.625 17 H 0.081 0.919 18 C -0.173 4.173 19 N -0.538 5.538 20 Si 0.864 3.136 21 H -0.212 1.212 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.850 -2.732 -11.891 21.622 hybrid contribution 0.148 -0.272 -1.827 1.853 sum -17.703 -3.004 -13.718 22.596 Atomic orbital electron populations 1.21848 0.95590 1.01483 1.01560 1.21136 0.95373 0.96528 0.98635 1.21895 1.01465 0.95891 1.01435 1.21665 0.95797 1.00150 0.97572 1.21634 0.95081 1.00719 0.97391 1.22080 0.95449 0.98718 0.94684 0.91227 1.22357 0.98112 0.99487 0.94953 1.22212 0.94833 1.00901 0.97601 1.22120 0.92239 0.95227 0.93418 0.94844 1.60912 1.05356 1.56028 1.07484 1.19499 0.91883 0.92089 0.88538 0.95748 1.22827 1.00302 0.99104 1.01303 1.21923 1.29024 1.01622 1.09887 0.91929 1.25622 0.93624 1.00259 0.97750 1.70840 1.16980 1.26301 1.39718 0.84169 0.76333 0.76336 0.76797 1.21152 1.21017 1.20709 1.22594 0.95261 1.01434 0.96503 0.92739 0.92993 0.92890 0.91530 0.92236 0.93153 0.92710 0.92327 0.91749 0.91583 0.92464 0.92574 0.91687 0.93069 0.90143 0.85600 0.92613 0.96333 0.93843 0.92183 0.90827 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.10 -0.81 2.92 -90.62 -0.26 -1.07 16 3 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 4 C -0.11 -1.04 4.53 -26.73 -0.12 -1.16 16 5 C -0.11 -1.13 4.47 -26.73 -0.12 -1.25 16 6 C -0.09 -1.09 2.93 -88.64 -0.26 -1.35 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.11 -1.48 5.47 -25.08 -0.14 -1.61 16 9 C -0.12 -1.94 6.39 -25.62 -0.16 -2.11 16 10 C 0.08 1.40 3.04 -66.60 -0.20 1.20 16 11 H 0.03 0.61 7.23 -51.92 -0.38 0.23 16 12 N -0.67 -14.01 5.89 -99.78 -0.59 -14.60 16 13 C 0.19 4.57 2.01 -68.86 -0.14 4.43 16 14 H 0.02 0.61 6.30 -51.93 -0.33 0.29 16 15 C -0.18 -3.95 8.90 37.16 0.33 -3.62 16 16 C -0.59 -16.80 9.05 -34.44 -0.31 -17.12 16 17 H 0.06 1.96 8.06 -52.49 -0.42 1.54 16 18 C 0.03 0.95 5.19 -17.82 -0.09 0.86 16 19 N -0.90 -28.09 13.70 55.43 0.76 -27.33 16 20 Si 1.04 25.60 26.44 -169.99 -4.50 21.10 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.48 6.15 56.52 0.35 -6.13 16 24 C -0.12 -1.68 5.70 -25.08 -0.14 -1.82 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.62 7.41 -51.93 -0.38 0.23 16 34 H 0.07 0.71 6.52 -51.93 -0.34 0.37 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.55 7.92 -51.93 -0.41 1.14 16 40 H 0.33 6.57 8.01 -39.29 -0.31 6.25 16 41 H 0.05 1.32 5.48 -51.93 -0.28 1.03 16 42 H 0.02 0.36 7.55 -51.93 -0.39 -0.03 16 43 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 44 H 0.27 8.30 8.73 -40.82 -0.36 7.95 16 45 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -29.53 346.36 -9.16 -38.69 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -9.11 Total: 3.20 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -0.95 Total: -26.28 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.17 Total: -41.94 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -4.50 Total: 21.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.53 -9.16 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.690 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds