Wall clock time and date at job start Sun Mar 29 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21700 * 119.99856 * 359.97438 * 13 12 2 15 15 C 1.46652 * 120.00085 * 180.02562 * 13 12 2 16 16 C 1.36543 * 125.98863 * 179.97438 * 15 13 12 17 17 C 1.40359 * 106.70950 * 179.97438 * 16 15 13 18 18 C 1.35131 * 107.11230 * 0.02562 * 17 16 15 19 19 N 1.48026 * 125.61475 * 179.97438 * 18 17 16 20 20 O 1.21804 * 120.00037 * 359.97438 * 19 18 17 21 21 O 1.21801 * 120.00087 * 179.97438 * 19 18 17 22 22 O 1.33931 * 108.77191 * 359.76960 * 18 17 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 28 28 H 1.08001 * 126.64430 * 359.97438 * 16 15 13 29 29 H 1.07998 * 126.44299 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8572 1.1624 -2.4119 15 6 2.6355 -0.7098 -3.5546 16 6 2.8117 -0.1510 -4.7880 17 6 3.2917 -1.1686 -5.6272 18 6 3.3857 -2.2899 -4.8789 19 7 3.8499 -3.6107 -5.3596 20 8 4.1872 -3.7518 -6.5215 21 8 3.8947 -4.5564 -4.5934 22 8 2.9939 -2.0083 -3.6295 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 2.2490 -1.6317 -1.1525 28 1 2.6191 0.8751 -5.0643 29 1 3.5386 -1.0735 -6.6743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336285.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:20 Heat of formation + Delta-G solvation = -33.148057 kcal Electronic energy + Delta-G solvation = -18079.821314 eV Core-core repulsion = 14780.125746 eV Total energy + Delta-G solvation = -3299.695568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.64747 -43.20308 -40.70755 -37.99927 -37.01216 -34.98004 -34.43565 -32.56740 -30.94960 -28.03019 -27.39673 -24.68862 -23.52145 -22.76511 -21.58471 -21.01291 -19.95167 -19.91536 -19.27912 -18.05807 -17.73791 -17.34188 -16.42139 -15.89460 -15.54045 -15.17648 -14.69931 -14.60151 -14.48462 -13.81097 -13.11994 -13.06317 -12.96593 -12.82015 -12.71733 -12.56337 -12.34968 -12.22049 -11.75240 -11.51606 -11.21566 -10.70512 -10.64462 -10.04073 -8.24296 -6.42036 -1.55835 -0.75105 -0.15648 0.79877 1.32430 1.44008 1.44476 1.52697 1.81125 2.12254 2.40968 3.06771 3.12772 3.42339 3.57293 3.89716 4.38222 4.61877 4.67212 4.82870 4.84073 4.96589 4.97881 5.22961 5.41244 5.57057 5.74848 5.99372 6.23935 6.52669 6.61625 6.96198 7.30405 8.81626 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.004936 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.515179 B = 5671.351683 C = 6420.701740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.070 0.930 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.686 5.686 13 C 0.582 3.418 14 O -0.545 6.545 15 C 0.005 3.995 16 C -0.120 4.120 17 C -0.048 4.048 18 C 0.003 3.997 19 N 0.066 4.934 20 O -0.086 6.086 21 O -0.189 6.189 22 O -0.155 6.155 23 H 0.039 0.961 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.268 0.732 27 H 0.407 0.593 28 H 0.211 0.789 29 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -4.178 -15.482 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.167 3.833 3 H 0.034 0.966 4 C -0.595 4.595 5 H 0.088 0.912 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.333 5.333 13 C 0.366 3.634 14 O -0.426 6.426 15 C -0.050 4.050 16 C -0.141 4.141 17 C -0.069 4.069 18 C -0.130 4.130 19 N 0.586 4.414 20 O -0.314 6.314 21 O -0.394 6.394 22 O -0.051 6.051 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.242 0.758 28 H 0.228 0.772 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.484 -2.861 -14.725 15.400 hybrid contribution 0.349 -1.056 1.001 1.496 sum 3.833 -3.917 -13.724 14.778 Atomic orbital electron populations 1.21944 0.97441 0.99823 1.00448 1.18592 0.91695 0.92392 0.80659 0.96550 1.21466 1.33272 1.13879 0.90841 0.91197 1.25702 0.94684 0.95506 1.02045 1.69999 1.36385 1.23543 1.24985 0.85429 0.78674 0.78702 0.77768 1.19669 1.20790 1.19170 1.46459 1.62643 1.14516 1.09651 1.16825 0.79005 0.85853 0.81686 1.90888 1.52710 1.14995 1.83983 1.22926 1.03727 0.79873 0.98479 1.22541 0.99584 1.03221 0.88757 1.22317 0.94511 0.86448 1.03624 1.22869 1.16078 0.87815 0.86268 1.42274 0.98438 0.99998 1.00683 1.94569 1.48041 1.88362 1.00440 1.94690 1.60148 1.30790 1.53740 1.83970 1.64411 1.28276 1.28457 0.94179 0.95900 0.90805 0.92225 0.75775 0.77166 0.75164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 9.26 71.98 0.67 -5.94 15 2 C 0.27 13.29 2.56 44.25 0.11 13.40 15 3 H 0.02 0.94 7.58 -2.39 -0.02 0.92 15 4 C -0.56 -28.79 8.73 25.60 0.22 -28.56 15 5 H 0.07 3.44 7.74 -2.91 -0.02 3.42 15 6 C 0.02 1.14 5.30 84.65 0.45 1.59 15 7 N -0.91 -50.24 11.32 21.44 0.24 -50.00 15 8 Si 0.97 41.21 29.54 68.60 2.03 43.24 15 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 10 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 12 N -0.69 -27.75 5.07 -450.08 -2.28 -30.03 15 13 C 0.58 21.64 7.75 86.44 0.67 22.31 15 14 O -0.55 -23.37 16.53 -4.35 -0.07 -23.44 15 15 C 0.01 0.15 7.13 24.07 0.17 0.32 15 16 C -0.12 -2.32 10.62 22.39 0.24 -2.08 15 17 C -0.05 -0.75 10.53 22.07 0.23 -0.51 15 18 C 0.00 0.07 8.23 81.21 0.67 0.74 15 19 N 0.07 1.66 4.45 -154.81 -0.69 0.97 15 20 O -0.09 -1.90 19.00 18.88 0.36 -1.54 15 21 O -0.19 -5.63 19.25 21.80 0.42 -5.21 15 22 O -0.16 -4.37 10.40 0.04 0.00 -4.37 15 23 H 0.04 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.07 3.88 6.07 -2.38 -0.01 3.87 15 26 H 0.27 14.02 8.31 -92.70 -0.77 13.25 15 27 H 0.41 14.86 8.29 -92.71 -0.77 14.09 15 28 H 0.21 3.03 8.06 -2.91 -0.02 3.01 15 29 H 0.23 1.40 8.06 -2.91 -0.02 1.37 15 Total: -1.00 -62.28 277.37 3.88 -58.41 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.44 Total: 10.72 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 3.43 Total: 1.26 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.73 Total: -79.06 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: 0.71 Total: -34.56 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -62.28 3.88 -58.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336285.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.258 kcal (2) G-P(sol) polarization free energy of solvation -62.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds