Wall clock time and date at job start Sun Mar 29 2020 23:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.34781 * 119.99732 * 274.99921 * 12 2 1 14 14 O 1.21700 * 119.99933 * 359.97438 * 13 12 2 15 15 C 1.46652 * 120.00014 * 180.02562 * 13 12 2 16 16 C 1.36541 * 125.98992 * 179.97438 * 15 13 12 17 17 C 1.40357 * 106.71165 * 179.97438 * 16 15 13 18 18 C 1.35133 * 107.11324 * 0.02562 * 17 16 15 19 19 N 1.48028 * 125.61670 * 180.02562 * 18 17 16 20 20 O 1.21804 * 119.99574 * 359.97438 * 19 18 17 21 21 O 1.21795 * 120.00135 * 179.97438 * 19 18 17 22 22 O 1.33927 * 108.76970 * 359.76776 * 18 17 16 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00364 * 94.99433 * 12 2 1 28 28 H 1.07999 * 126.64560 * 359.97438 * 16 15 13 29 29 H 1.08000 * 126.44750 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8581 1.1626 2.4117 15 6 2.6366 -0.7095 3.5544 16 6 2.8138 -0.1505 4.7875 17 6 3.2933 -1.1682 5.6268 18 6 3.3872 -2.2895 4.8785 19 7 3.8510 -3.6105 5.3594 20 8 4.1889 -3.7513 6.5211 21 8 3.8948 -4.5564 4.5934 22 8 2.9861 -2.0103 3.6316 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 2.2491 -1.6318 1.1526 28 1 2.6221 0.8758 5.0636 29 1 3.5415 -1.0729 6.6735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:22 Heat of formation + Delta-G solvation = -14.863644 kcal Electronic energy + Delta-G solvation = -18079.158835 eV Core-core repulsion = 14780.256138 eV Total energy + Delta-G solvation = -3298.902697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.61035 -42.14992 -39.15821 -36.95567 -35.27002 -33.89921 -32.67182 -31.36343 -29.25113 -26.85027 -25.42253 -23.39620 -22.51437 -21.29016 -20.03606 -19.97205 -18.91506 -18.43725 -18.23282 -16.64180 -16.24247 -15.59119 -14.72154 -14.36063 -14.34076 -14.09481 -13.66155 -13.28445 -12.62685 -11.99915 -11.94544 -11.69357 -11.50087 -11.27670 -11.10592 -10.96722 -10.84114 -10.52333 -10.38371 -9.91042 -9.57850 -9.25087 -8.74859 -8.31106 -6.26954 -4.37467 -0.50169 0.26486 0.93949 1.74048 2.45412 3.17691 3.20610 3.25092 3.27120 3.48502 4.03015 4.23484 4.51206 4.64201 5.05668 5.06697 5.14249 5.53118 5.88552 5.94580 6.59877 6.69116 6.89106 7.02323 7.23601 7.30824 7.50881 7.66850 7.93097 8.21604 8.39704 8.69846 9.30263 10.79076 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.004936 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.570552 B = 5671.485109 C = 6420.539119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.261 3.739 3 H 0.056 0.944 4 C -0.541 4.541 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.680 5.680 13 C 0.577 3.423 14 O -0.513 6.513 15 C 0.034 3.966 16 C -0.152 4.152 17 C -0.083 4.083 18 C 0.016 3.984 19 N 0.066 4.934 20 O -0.132 6.132 21 O -0.129 6.129 22 O -0.135 6.135 23 H 0.017 0.983 24 H 0.096 0.904 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.398 0.602 28 H 0.186 0.814 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -3.738 13.488 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.074 0.926 4 C -0.579 4.579 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.326 5.326 13 C 0.358 3.642 14 O -0.391 6.391 15 C -0.023 4.023 16 C -0.173 4.173 17 C -0.104 4.104 18 C -0.118 4.118 19 N 0.588 4.412 20 O -0.346 6.346 21 O -0.350 6.350 22 O -0.029 6.029 23 H 0.036 0.964 24 H 0.114 0.886 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.232 0.768 28 H 0.204 0.796 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.713 -2.334 12.838 13.328 hybrid contribution 0.531 -1.253 -0.628 1.499 sum 3.244 -3.587 12.211 13.133 Atomic orbital electron populations 1.22118 0.97681 0.99664 1.01374 1.19018 0.91539 0.94157 0.79210 0.92604 1.21166 1.33105 1.13609 0.90005 0.91743 1.24875 0.94594 0.94876 0.99154 1.69881 1.35535 1.22227 1.24254 0.86379 0.79304 0.79272 0.81812 1.20362 1.20934 1.19717 1.46733 1.61803 1.14183 1.09910 1.16605 0.80198 0.86175 0.81224 1.90915 1.51566 1.13580 1.83045 1.23740 1.00522 0.79096 0.98907 1.22126 1.02671 1.02093 0.90367 1.21769 0.97547 0.88884 1.02196 1.22566 1.15289 0.87575 0.86391 1.42184 0.98588 0.99757 1.00688 1.94608 1.50641 1.88456 1.00848 1.94656 1.57078 1.29936 1.53294 1.84041 1.63324 1.28160 1.27410 0.96386 0.88571 0.95036 0.92318 0.76791 0.79625 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.16 15 2 C 0.26 6.26 2.56 -69.08 -0.18 6.09 15 3 H 0.06 1.51 7.58 -51.93 -0.39 1.12 15 4 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 15 5 H 0.06 1.58 7.74 -52.48 -0.41 1.18 15 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 15 7 N -0.88 -23.79 11.32 55.43 0.63 -23.16 15 8 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 12 N -0.68 -13.47 5.07 -56.25 -0.28 -13.76 15 13 C 0.58 10.66 7.75 -12.86 -0.10 10.56 15 14 O -0.51 -10.86 16.53 5.19 0.09 -10.77 15 15 C 0.03 0.50 7.13 -36.80 -0.26 0.23 15 16 C -0.15 -1.74 10.62 -39.40 -0.42 -2.15 15 17 C -0.08 -0.83 10.53 -39.89 -0.42 -1.25 15 18 C 0.02 0.20 8.23 -10.73 -0.09 0.11 15 19 N 0.07 0.90 4.45 32.67 0.15 1.05 15 20 O -0.13 -1.68 19.00 -29.46 -0.56 -2.24 15 21 O -0.13 -1.93 19.25 -32.51 -0.63 -2.55 15 22 O -0.13 -1.97 10.40 -0.34 0.00 -1.97 15 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 15 24 H 0.10 2.45 6.07 -51.93 -0.32 2.13 15 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 27 H 0.40 7.12 8.30 -40.82 -0.34 6.78 15 28 H 0.19 1.75 8.06 -52.49 -0.42 1.32 15 29 H 0.19 1.20 8.06 -52.49 -0.42 0.78 15 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -28.01 277.37 -5.25 -33.26 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.28 Total: 2.87 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.94 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.49 Total: -35.87 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.10 Total: -17.54 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.01 -5.25 -33.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.394 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds