Wall clock time and date at job start Sun Mar 29 2020 23:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42100 * 108.58039 * 294.48948 * 7 6 5 9 9 O 1.42095 * 108.57756 * 65.51200 * 7 6 5 10 10 C 1.81397 * 101.92146 * 180.02562 * 7 6 5 11 11 C 1.50705 * 109.47079 * 180.02562 * 10 7 6 12 12 H 1.08001 * 119.99968 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00233 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00217 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47309 * 59.99958 * 15 13 11 17 17 H 1.48502 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47279 * 299.99822 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 5 4 21 21 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 22 22 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 23 23 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 27 27 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 28 28 H 1.09001 * 109.47056 * 299.99862 * 10 7 6 29 29 H 1.09002 * 109.47231 * 60.00239 * 10 7 6 30 30 H 0.96996 * 119.99922 * 180.02562 * 14 13 11 31 31 H 1.07999 * 119.99934 * 180.25938 * 19 5 4 32 32 H 1.08001 * 120.00294 * 179.76453 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0168 1.2214 2.3145 9 8 6.0167 -1.2301 2.3098 10 6 8.1872 -0.0021 1.4526 11 6 8.8770 -0.0051 2.7925 12 1 8.2925 -0.0071 3.7008 13 6 10.2541 -0.0043 2.8590 14 7 10.9658 -0.0013 1.7530 15 14 11.1091 -0.0074 4.5198 16 1 10.7141 -1.2218 5.2777 17 1 12.5805 -0.0053 4.3191 18 1 10.7124 1.2032 5.2830 19 6 3.5805 -1.1972 0.0010 20 6 2.1982 -1.1972 0.0009 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6582 2.1324 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1400 -0.8891 -0.5270 27 1 6.1401 0.8909 -0.5236 28 1 8.4781 -0.8908 0.8926 29 1 8.4774 0.8892 0.8962 30 1 11.9347 -0.0011 1.7998 31 1 4.1205 -2.1325 0.0013 32 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:03 Heat of formation + Delta-G solvation = -64.234029 kcal Electronic energy + Delta-G solvation = -16193.083119 eV Core-core repulsion = 13438.332776 eV Total energy + Delta-G solvation = -2754.750343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38195 -35.99137 -35.05090 -33.92430 -33.34173 -30.89165 -29.56403 -28.99196 -25.22092 -23.39631 -22.69962 -20.85032 -18.03026 -16.99288 -16.12890 -15.80177 -15.72327 -15.17398 -14.84674 -14.84309 -14.13714 -13.80456 -13.38646 -12.92799 -12.74005 -12.48278 -12.13933 -12.13862 -12.04068 -11.40795 -11.22220 -11.13677 -11.06184 -10.90919 -10.86903 -10.63624 -10.38436 -9.82659 -9.16988 -8.88219 -8.70095 -8.32878 -6.32915 -4.42443 0.76762 1.45091 1.48682 3.25300 3.27038 3.32509 3.76765 3.82537 4.22367 4.40800 4.63160 4.81689 4.88635 4.97280 5.04332 5.06188 5.26000 5.45690 5.50632 5.51619 5.63673 5.74162 5.76255 6.10115 6.10517 6.42303 6.58838 6.60083 6.64641 6.69197 7.02315 7.48169 7.75249 8.59467 9.24600 10.78982 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.055894 B = 0.004754 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.828491 B = 5887.964114 C = 5914.043825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.103 4.103 5 C -0.081 4.081 6 C -0.589 4.589 7 S 2.392 3.608 8 O -0.953 6.953 9 O -0.953 6.953 10 C -0.404 4.404 11 C -0.530 4.530 12 H 0.072 0.928 13 C 0.075 3.925 14 N -0.883 5.883 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.103 4.103 20 C -0.121 4.121 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.269 0.731 31 H 0.130 0.870 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.624 0.007 -6.866 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.712 4.712 7 S 2.577 3.423 8 O -0.950 6.950 9 O -0.950 6.950 10 C -0.538 4.538 11 C -0.569 4.569 12 H 0.090 0.910 13 C -0.131 4.131 14 N -0.519 5.519 15 Si 0.732 3.268 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.121 4.121 20 C -0.139 4.139 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.142 0.858 25 H 0.148 0.852 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.982 0.006 -6.199 16.214 hybrid contribution 1.071 0.002 -0.138 1.080 sum -13.911 0.007 -6.337 15.286 Atomic orbital electron populations 1.20779 0.91205 1.02804 1.02130 1.19965 0.96089 0.93300 0.99762 1.20998 0.93886 0.97635 1.01334 1.21165 0.94471 0.97723 0.98779 1.19073 0.92332 0.94134 1.02663 1.29613 1.00993 1.11593 1.28989 1.09096 0.81253 0.75198 0.76716 1.93468 1.83593 1.45824 1.72114 1.93468 1.83583 1.45648 1.72295 1.27533 1.13006 1.06645 1.06648 1.20331 0.92275 1.55141 0.89139 0.91038 1.24935 0.96929 0.93547 0.97703 1.69939 1.06727 1.47873 1.27345 0.86408 0.78087 0.79510 0.82833 1.19397 1.20734 1.19404 1.21167 0.94473 0.97727 0.98778 1.20999 0.93886 0.97635 1.01330 0.91297 0.91533 0.91534 0.85779 0.85216 0.84658 0.84660 0.89696 0.89693 0.92156 0.85210 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.72 16 3 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 4 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 5 C -0.08 -1.29 5.14 -104.63 -0.54 -1.82 16 6 C -0.59 -9.15 5.93 36.00 0.21 -8.94 16 7 S 2.39 50.14 4.62 -107.50 -0.50 49.64 16 8 O -0.95 -22.49 18.10 -57.83 -1.05 -23.54 16 9 O -0.95 -22.48 18.10 -57.83 -1.05 -23.53 16 10 C -0.40 -9.58 5.56 36.01 0.20 -9.38 16 11 C -0.53 -14.76 9.13 -34.44 -0.31 -15.07 16 12 H 0.07 1.98 7.71 -52.49 -0.40 1.58 16 13 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 14 N -0.88 -24.88 13.29 55.43 0.74 -24.14 16 15 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.10 -1.52 9.70 -39.58 -0.38 -1.91 16 20 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 23 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 24 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.14 1.77 8.09 -51.92 -0.42 1.35 16 27 H 0.14 1.77 8.09 -51.92 -0.42 1.35 16 28 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 29 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -34.12 295.90 -8.92 -43.04 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.18 Total: 1.25 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: -2.33 Total: -43.27 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.74 Total: -24.14 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.09 Total: -47.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 50.14 SS G_CDS: -0.50 Total: 49.64 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.12 -8.92 -43.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.191 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds