Wall clock time and date at job start Sun Mar 29 2020 23:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42100 * 108.58039 * 294.48948 * 7 6 5 9 9 O 1.42095 * 108.57756 * 65.51200 * 7 6 5 10 10 C 1.81397 * 101.92146 * 180.02562 * 7 6 5 11 11 C 1.50705 * 109.47079 * 180.02562 * 10 7 6 12 12 H 1.08001 * 119.99968 * 359.97438 * 11 10 7 13 13 C 1.37876 * 120.00233 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00217 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47309 * 59.99958 * 15 13 11 17 17 H 1.48502 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47279 * 299.99822 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 5 4 21 21 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 22 22 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 23 23 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 27 27 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 28 28 H 1.09001 * 109.47056 * 299.99862 * 10 7 6 29 29 H 1.09002 * 109.47231 * 60.00239 * 10 7 6 30 30 H 0.96996 * 119.99922 * 180.02562 * 14 13 11 31 31 H 1.07999 * 119.99934 * 180.25938 * 19 5 4 32 32 H 1.08001 * 120.00294 * 179.76453 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0168 1.2214 2.3145 9 8 6.0167 -1.2301 2.3098 10 6 8.1872 -0.0021 1.4526 11 6 8.8770 -0.0051 2.7925 12 1 8.2925 -0.0071 3.7008 13 6 10.2541 -0.0043 2.8590 14 7 10.9658 -0.0013 1.7530 15 14 11.1091 -0.0074 4.5198 16 1 10.7141 -1.2218 5.2777 17 1 12.5805 -0.0053 4.3191 18 1 10.7124 1.2032 5.2830 19 6 3.5805 -1.1972 0.0010 20 6 2.1982 -1.1972 0.0009 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6582 2.1324 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1400 -0.8891 -0.5270 27 1 6.1401 0.8909 -0.5236 28 1 8.4781 -0.8908 0.8926 29 1 8.4774 0.8892 0.8962 30 1 11.9347 -0.0011 1.7998 31 1 4.1205 -2.1325 0.0013 32 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:03 Heat of formation + Delta-G solvation = -87.262004 kcal Electronic energy + Delta-G solvation = -16194.081687 eV Core-core repulsion = 13438.332776 eV Total energy + Delta-G solvation = -2755.748911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39362 -37.77013 -36.82188 -35.39703 -34.95243 -31.90266 -31.10711 -30.44343 -26.36631 -25.26779 -23.71842 -21.88977 -19.71271 -18.95198 -17.59014 -17.36094 -17.07447 -16.64791 -16.24125 -16.12840 -15.80370 -14.61500 -14.45755 -14.37204 -14.03534 -13.95693 -13.77032 -13.40556 -13.14653 -12.97406 -12.88108 -12.84084 -12.71566 -12.52370 -12.21066 -11.90681 -11.88825 -11.72589 -10.96287 -10.77375 -9.91242 -9.43161 -8.41204 -6.57647 -0.82271 0.38422 0.42312 1.37034 1.40148 1.48457 2.18186 2.30879 2.71583 2.92196 2.93993 3.26215 3.53389 3.80846 4.04174 4.09203 4.11627 4.48050 4.52704 4.54456 4.77654 4.78476 4.83097 4.86791 4.92310 5.12440 5.26103 5.35966 5.40984 5.52392 5.63368 5.74797 6.03780 6.51905 7.12750 8.71073 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.055894 B = 0.004754 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.828491 B = 5887.964114 C = 5914.043825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.553 4.553 7 S 2.406 3.594 8 O -0.987 6.987 9 O -0.987 6.987 10 C -0.425 4.425 11 C -0.565 4.565 12 H 0.059 0.941 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.961 3.039 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.265 1.265 19 C -0.119 4.119 20 C -0.129 4.129 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.150 0.850 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.274 0.726 31 H 0.135 0.865 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.370 0.009 -7.653 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.682 4.682 7 S 2.596 3.404 8 O -0.984 6.984 9 O -0.984 6.984 10 C -0.557 4.557 11 C -0.604 4.604 12 H 0.077 0.923 13 C -0.178 4.178 14 N -0.546 5.546 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.138 4.138 20 C -0.147 4.147 21 H 0.104 0.896 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.168 0.832 25 H 0.153 0.847 26 H 0.182 0.818 27 H 0.181 0.819 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.666 0.008 -6.923 18.047 hybrid contribution 1.416 0.001 -0.017 1.416 sum -15.250 0.009 -6.941 16.755 Atomic orbital electron populations 1.20867 0.88485 1.03932 1.03542 1.20461 0.98134 0.92751 0.97452 1.21382 0.93385 0.99244 1.00671 1.21444 0.95698 0.97702 0.98961 1.19209 0.91986 0.95165 1.05357 1.29214 1.01465 1.14601 1.22918 1.08296 0.79257 0.73770 0.79031 1.93413 1.83214 1.46837 1.74980 1.93412 1.83202 1.46668 1.75150 1.27627 1.16743 1.06554 1.04814 1.20744 0.93296 1.55681 0.90632 0.92318 1.25797 0.97628 0.93023 1.01338 1.70000 1.07174 1.48342 1.29052 0.85559 0.77730 0.79689 0.78712 1.18906 1.19100 1.18922 1.21446 0.95701 0.97703 0.98968 1.21383 0.93383 0.99245 1.00672 0.89572 0.90454 0.90452 0.83235 0.84654 0.81849 0.81851 0.89605 0.89605 0.91686 0.84662 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.88 5.88 -19.86 -0.12 -1.99 16 3 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 4 C -0.12 -3.33 9.70 22.27 0.22 -3.11 16 5 C -0.12 -3.50 5.14 -19.87 -0.10 -3.60 16 6 C -0.55 -16.38 5.93 71.23 0.42 -15.95 16 7 S 2.41 102.23 4.62 -56.49 -0.26 101.97 16 8 O -0.99 -47.59 18.10 -127.37 -2.30 -49.89 16 9 O -0.99 -47.56 18.10 -127.37 -2.31 -49.87 16 10 C -0.43 -20.73 5.56 71.24 0.40 -20.33 16 11 C -0.57 -32.44 9.13 25.60 0.23 -32.21 16 12 H 0.06 3.40 7.71 -2.91 -0.02 3.37 16 13 C 0.03 1.40 5.46 84.65 0.46 1.86 16 14 N -0.91 -51.88 13.29 21.45 0.28 -51.60 16 15 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.12 -3.34 9.70 22.27 0.22 -3.12 16 20 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 23 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 24 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 25 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 26 H 0.16 3.93 8.09 -2.39 -0.02 3.91 16 27 H 0.16 3.93 8.09 -2.39 -0.02 3.91 16 28 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 29 H 0.09 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -74.85 295.90 1.41 -73.44 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.10 Total: 15.25 kcal Atomic # 6 Polarization: -87.73 SS G_CDS: 2.87 Total: -84.85 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.28 Total: -51.60 kcal Atomic # 8 Polarization: -95.15 SS G_CDS: -4.61 Total: -99.76 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 102.23 SS G_CDS: -0.26 Total: 101.97 kcal Total: -74.85 1.41 -73.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.822 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds