Wall clock time and date at job start Sun Mar 29 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 S 1.80996 * 109.47154 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00249 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99935 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99847 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99935 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47116 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47318 * 120.00053 * 15 13 11 18 18 H 1.48501 * 109.46997 * 239.99827 * 15 13 11 19 19 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 20 20 C 1.38135 * 119.99861 * 359.97438 * 19 6 5 21 21 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 22 22 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 24 24 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 26 26 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 27 27 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 28 28 H 1.09001 * 109.47144 * 299.99519 * 9 8 7 29 29 H 1.09004 * 109.47011 * 59.99539 * 9 8 7 30 30 H 0.97004 * 119.99547 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.00034 * 180.02562 * 19 6 5 32 32 H 1.08001 * 119.99636 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 16 7.6691 6.3328 0.0017 11 6 7.9750 8.0680 0.0015 12 1 7.1476 8.7622 0.0019 13 6 9.2792 8.5428 0.0010 14 7 10.2876 7.6967 0.0001 15 14 9.6035 10.3824 0.0015 16 1 8.3106 11.1129 0.0019 17 1 10.3795 10.7480 1.2137 18 1 10.3781 10.7489 -1.2113 19 6 4.0584 2.5152 0.0004 20 6 3.4313 1.2844 0.0006 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2123 2.3183 0.0098 25 1 1.3296 4.5114 0.0014 26 1 5.7129 4.3755 0.8906 27 1 5.7123 4.3770 -0.8893 28 1 5.4955 6.8469 -0.8880 29 1 5.4960 6.8460 0.8920 30 1 11.1991 8.0286 0.0001 31 1 5.1370 2.5718 0.0009 32 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064855226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:09 Heat of formation + Delta-G solvation = -59.368004 kcal Electronic energy + Delta-G solvation = -15352.346126 eV Core-core repulsion = 12597.806790 eV Total energy + Delta-G solvation = -2754.539336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39029 -38.95751 -36.36585 -32.51113 -31.63675 -30.88687 -29.07164 -27.20391 -25.69199 -23.68530 -22.47055 -21.28113 -18.50100 -17.68601 -17.57205 -16.38381 -15.98733 -15.71527 -14.92695 -14.85832 -14.58047 -14.09366 -13.65243 -13.29655 -13.19717 -12.74538 -12.57094 -12.29825 -12.12427 -11.54006 -11.18972 -11.06116 -10.98145 -10.79271 -10.59539 -10.20983 -9.82736 -9.15225 -9.12766 -8.45956 -7.72745 -6.64102 -6.30091 -4.02126 1.19171 1.45120 2.89199 3.16026 3.18595 3.25376 3.31433 3.69760 3.92115 4.15418 4.68079 4.74284 4.87009 4.91169 5.06881 5.08071 5.21138 5.22760 5.27242 5.36695 5.47374 5.58869 5.75499 5.86758 5.94104 6.21418 6.27317 6.33062 6.50506 6.57264 7.22053 7.55531 7.60297 8.30864 9.16578 10.78251 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.080117 B = 0.003190 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.405475 B = 8775.011672 C = 9098.668289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.079 3.921 4 C -0.168 4.168 5 C -0.119 4.119 6 C 0.107 3.893 7 O -0.316 6.316 8 C 0.081 3.919 9 C -0.119 4.119 10 S -0.114 6.114 11 C -0.516 4.516 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.869 5.869 15 Si 0.922 3.078 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.170 4.170 20 C -0.109 4.109 21 H 0.053 0.947 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.268 0.732 31 H 0.139 0.861 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.210 -12.221 0.005 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.035 3.965 4 C -0.187 4.187 5 C -0.138 4.138 6 C 0.061 3.939 7 O -0.230 6.230 8 C 0.005 3.995 9 C -0.267 4.267 10 S 0.113 5.887 11 C -0.664 4.664 12 H 0.095 0.905 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.749 3.251 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.188 4.188 20 C -0.127 4.127 21 H 0.072 0.928 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.275 -13.094 0.005 20.888 hybrid contribution -0.666 2.155 0.000 2.256 sum -16.941 -10.939 0.004 20.166 Atomic orbital electron populations 1.23002 0.78832 1.03646 1.01194 1.86063 1.20979 1.26878 1.89582 1.18866 0.92269 0.84112 1.01297 1.20993 0.99802 0.91463 1.06445 1.20221 0.91600 0.97923 1.04059 1.18977 0.92184 0.84831 0.97934 1.86107 1.22408 1.26152 1.88349 1.22609 0.76672 0.98351 1.01854 1.23289 1.02804 0.96086 1.04552 1.84567 0.94067 1.13119 1.96991 1.22708 0.95081 0.89801 1.58841 0.90548 1.25032 0.95015 0.99326 0.94407 1.70022 0.99025 1.34378 1.47045 0.86046 0.78498 0.82662 0.77935 1.19500 1.20488 1.20493 1.21226 1.00758 0.91343 1.05498 1.20216 0.91293 0.98068 1.03160 0.92826 0.88496 0.92836 0.85098 0.84975 0.91479 0.91483 0.90901 0.90904 0.92201 0.84289 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.54 10.50 -19.72 -0.21 -3.75 16 3 C 0.08 0.95 6.69 -39.24 -0.26 0.69 16 4 C -0.17 -1.88 9.03 -39.45 -0.36 -2.24 16 5 C -0.12 -1.52 9.98 -39.45 -0.39 -1.91 16 6 C 0.11 1.57 6.69 -39.24 -0.26 1.31 16 7 O -0.32 -5.29 10.14 -19.68 -0.20 -5.49 16 8 C 0.08 1.39 4.74 37.16 0.18 1.57 16 9 C -0.12 -2.46 6.04 37.16 0.22 -2.23 16 10 S -0.11 -2.93 21.44 -107.50 -2.30 -5.24 16 11 C -0.52 -14.60 9.50 30.94 0.29 -14.31 16 12 H 0.08 2.10 7.80 -52.49 -0.41 1.69 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 14 N -0.87 -25.55 13.22 55.49 0.73 -24.81 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 C -0.17 -2.29 9.03 -39.45 -0.36 -2.64 16 20 C -0.11 -1.35 9.98 -39.45 -0.39 -1.75 16 21 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 24 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 25 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.07 1.10 7.66 -51.93 -0.40 0.70 16 27 H 0.07 1.10 7.66 -51.93 -0.40 0.70 16 28 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 29 H 0.07 1.50 8.14 -51.91 -0.42 1.08 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.14 1.77 6.29 -52.48 -0.33 1.44 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -31.28 293.04 -6.93 -38.21 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.91 Total: -1.19 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.43 Total: -18.41 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.73 Total: -24.81 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.41 Total: -9.24 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.30 Total: -5.24 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.28 -6.93 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064855226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.163 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds