Wall clock time and date at job start Sun Mar 29 2020 23:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 S 1.80996 * 109.47154 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00249 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99935 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99847 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99935 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47116 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47318 * 120.00053 * 15 13 11 18 18 H 1.48501 * 109.46997 * 239.99827 * 15 13 11 19 19 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 20 20 C 1.38135 * 119.99861 * 359.97438 * 19 6 5 21 21 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 22 22 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 24 24 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 26 26 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 27 27 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 28 28 H 1.09001 * 109.47144 * 299.99519 * 9 8 7 29 29 H 1.09004 * 109.47011 * 59.99539 * 9 8 7 30 30 H 0.97004 * 119.99547 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.00034 * 180.02562 * 19 6 5 32 32 H 1.08001 * 119.99636 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 16 7.6691 6.3328 0.0017 11 6 7.9750 8.0680 0.0015 12 1 7.1476 8.7622 0.0019 13 6 9.2792 8.5428 0.0010 14 7 10.2876 7.6967 0.0001 15 14 9.6035 10.3824 0.0015 16 1 8.3106 11.1129 0.0019 17 1 10.3795 10.7480 1.2137 18 1 10.3781 10.7489 -1.2113 19 6 4.0584 2.5152 0.0004 20 6 3.4313 1.2844 0.0006 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2123 2.3183 0.0098 25 1 1.3296 4.5114 0.0014 26 1 5.7129 4.3755 0.8906 27 1 5.7123 4.3770 -0.8893 28 1 5.4955 6.8469 -0.8880 29 1 5.4960 6.8460 0.8920 30 1 11.1991 8.0286 0.0001 31 1 5.1370 2.5718 0.0009 32 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064855226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:08 Heat of formation + Delta-G solvation = -78.241156 kcal Electronic energy + Delta-G solvation = -15353.164527 eV Core-core repulsion = 12597.806790 eV Total energy + Delta-G solvation = -2755.357737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36702 -39.97594 -37.36664 -34.64672 -32.91290 -32.00849 -30.01353 -27.99698 -27.75956 -24.97616 -23.51982 -22.38746 -19.66241 -19.46806 -18.67505 -17.35860 -17.21067 -16.92185 -16.54909 -16.14902 -15.72646 -15.59913 -14.68822 -14.65202 -14.48852 -13.98601 -13.81422 -13.35384 -13.28498 -12.94497 -12.94427 -12.60313 -12.44115 -12.21838 -11.74212 -11.61366 -11.32575 -11.17405 -10.46829 -10.09887 -8.75224 -8.71709 -8.41366 -6.18923 0.24468 0.45340 1.19310 1.39057 1.42068 1.55407 2.21337 2.39923 2.55935 2.72334 2.93996 3.26331 3.75006 3.85635 3.88314 3.93670 4.10210 4.31440 4.34786 4.44264 4.45028 4.64647 4.68392 4.74607 4.80860 4.96784 5.00333 5.28456 5.35308 5.38494 5.58221 6.15686 6.30803 6.52883 7.01438 8.68371 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.080117 B = 0.003190 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.405475 B = 8775.011672 C = 9098.668289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.080 3.920 4 C -0.163 4.163 5 C -0.121 4.121 6 C 0.075 3.925 7 O -0.329 6.329 8 C 0.094 3.906 9 C -0.098 4.098 10 S -0.161 6.161 11 C -0.541 4.541 12 H 0.075 0.925 13 C 0.018 3.982 14 N -0.906 5.906 15 Si 0.997 3.003 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.176 4.176 20 C -0.120 4.120 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.064 0.936 24 H 0.163 0.837 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.274 0.726 31 H 0.140 0.860 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.930 -12.306 0.007 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.181 4.181 5 C -0.140 4.140 6 C 0.030 3.970 7 O -0.244 6.244 8 C 0.018 3.982 9 C -0.247 4.247 10 S 0.067 5.933 11 C -0.688 4.688 12 H 0.093 0.907 13 C -0.188 4.188 14 N -0.542 5.542 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.194 4.194 20 C -0.139 4.139 21 H 0.083 0.917 22 H 0.136 0.864 23 H 0.083 0.917 24 H 0.180 0.820 25 H 0.163 0.837 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.018 -13.204 0.007 22.338 hybrid contribution -0.306 2.016 -0.001 2.039 sum -18.324 -11.188 0.006 21.469 Atomic orbital electron populations 1.23344 0.76563 1.05558 1.02272 1.86058 1.23359 1.26298 1.89253 1.19043 0.92357 0.84957 1.00156 1.21296 1.01343 0.90401 1.05076 1.20479 0.90910 0.99188 1.03415 1.19259 0.93088 0.84275 1.00398 1.86032 1.21464 1.27659 1.89224 1.22312 0.77605 0.95838 1.02467 1.23099 0.98760 0.98545 1.04276 1.84476 0.99064 1.12662 1.97115 1.23059 0.95634 0.90827 1.59327 0.90689 1.26066 0.94581 1.04582 0.93540 1.70135 0.99608 1.36760 1.47680 0.84925 0.78610 0.76204 0.78381 1.18735 1.19551 1.19562 1.21287 1.00897 0.91565 1.05672 1.20414 0.92087 0.98110 1.03277 0.91693 0.86389 0.91693 0.81978 0.83742 0.90923 0.90930 0.91098 0.91101 0.91739 0.84257 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.62 10.50 -93.49 -0.98 -7.60 16 3 C 0.08 1.78 6.69 22.49 0.15 1.93 16 4 C -0.16 -3.24 9.03 22.35 0.20 -3.04 16 5 C -0.12 -2.90 9.98 22.35 0.22 -2.68 16 6 C 0.07 2.16 6.69 22.49 0.15 2.31 16 7 O -0.33 -10.93 10.14 -93.35 -0.95 -11.88 16 8 C 0.09 3.23 4.74 71.98 0.34 3.57 16 9 C -0.10 -4.08 6.04 71.98 0.43 -3.65 16 10 S -0.16 -8.40 21.44 -56.49 -1.21 -9.61 16 11 C -0.54 -30.94 9.50 67.95 0.65 -30.30 16 12 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 13 C 0.02 0.99 5.49 84.86 0.47 1.46 16 14 N -0.91 -53.74 13.22 21.65 0.29 -53.45 16 15 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 C -0.18 -4.67 9.03 22.35 0.20 -4.47 16 20 C -0.12 -2.87 9.98 22.35 0.22 -2.65 16 21 H 0.06 0.55 7.67 -2.39 -0.02 0.54 16 22 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.55 7.65 -2.39 -0.02 0.54 16 24 H 0.16 2.11 6.29 -2.91 -0.02 2.10 16 25 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 26 H 0.07 2.40 7.66 -2.39 -0.02 2.38 16 27 H 0.07 2.40 7.66 -2.39 -0.02 2.38 16 28 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.14 3.56 6.29 -2.91 -0.02 3.54 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -66.98 293.04 4.44 -62.54 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.11 Total: 10.73 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 4.15 Total: -36.22 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.29 Total: -53.45 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.93 Total: -19.48 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.21 Total: -9.61 kcal Total: -66.98 4.44 -62.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064855226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.700 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds