Wall clock time and date at job start Sun Mar 29 2020 23:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38271 * 120.05803 * 359.41293 * 5 4 3 7 7 S 1.76199 * 119.94634 * 180.30266 * 6 5 4 8 8 O 1.42090 * 103.00197 * 156.45024 * 7 6 5 9 9 C 1.81402 * 103.00137 * 270.30511 * 7 6 5 10 10 C 1.53000 * 109.47049 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47156 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00176 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00276 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00497 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99910 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47484 * 89.99869 * 15 13 11 17 17 H 1.48503 * 109.47557 * 209.99961 * 15 13 11 18 18 H 1.48507 * 109.47373 * 329.99735 * 15 13 11 19 19 C 1.38259 * 120.10889 * 0.60974 * 6 5 4 20 20 C 1.38146 * 120.05909 * 359.67363 * 19 6 5 21 21 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 22 22 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 23 23 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 26 26 H 1.08993 * 109.47056 * 299.99786 * 9 7 6 27 27 H 1.09001 * 109.47120 * 59.99769 * 9 7 6 28 28 H 1.09000 * 109.47467 * 299.99779 * 10 9 7 29 29 H 1.09001 * 109.47247 * 59.99970 * 10 9 7 30 30 H 0.96989 * 120.00618 * 180.02562 * 14 13 11 31 31 H 1.08006 * 119.97147 * 179.69573 * 19 6 5 32 32 H 1.07993 * 120.03340 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0005 7 16 4.1020 5.2456 0.0005 8 8 3.1185 6.1056 -0.5583 9 6 4.2885 5.6085 1.7681 10 6 4.9794 6.9627 1.9405 11 6 5.1338 7.2645 3.4088 12 1 4.7755 6.5606 4.1454 13 6 5.7336 8.4387 3.8120 14 7 5.8689 8.7019 5.0934 15 14 6.3541 9.6558 2.5381 16 1 5.2717 10.6149 2.2013 17 1 7.5186 10.3963 3.0868 18 1 6.7657 8.9238 1.3132 19 6 1.9212 3.6047 0.0014 20 6 1.2916 2.3751 0.0010 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 4.0209 0.3798 -0.0014 25 1 5.1346 2.5748 0.0103 26 1 3.3057 5.6392 2.2383 27 1 4.8916 4.8310 2.2369 28 1 5.9623 6.9317 1.4703 29 1 4.3767 7.7405 1.4715 30 1 6.2904 9.5280 5.3771 31 1 1.3343 4.5114 0.0022 32 1 0.2130 2.3202 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082291244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:23 Heat of formation + Delta-G solvation = -55.777836 kcal Electronic energy + Delta-G solvation = -15803.191302 eV Core-core repulsion = 13048.807647 eV Total energy + Delta-G solvation = -2754.383655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21132 -37.48119 -35.26457 -33.67347 -31.22058 -31.20810 -30.29799 -27.57168 -25.56002 -22.86974 -22.42208 -20.79465 -18.46676 -17.59236 -17.01398 -16.33222 -15.99904 -15.82354 -14.71934 -14.30885 -14.28997 -14.02579 -13.79819 -13.55733 -12.82742 -12.80848 -12.55685 -12.17113 -11.90609 -11.56887 -11.39202 -11.05072 -10.96223 -10.62442 -10.18581 -9.95480 -9.49489 -9.25394 -9.10579 -8.58755 -8.57360 -7.81151 -6.07317 -4.06670 1.01246 1.27087 2.23327 3.00325 3.14378 3.31166 3.38352 3.40252 3.65350 4.29947 4.42840 4.62288 4.73659 4.85325 4.87707 5.15904 5.25560 5.25751 5.31809 5.52943 5.87917 5.90586 5.96644 6.03720 6.18646 6.31812 6.60457 6.63273 7.09248 7.15500 7.19756 7.70153 8.49746 8.96349 9.53533 11.05818 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.041777 B = 0.004394 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.070171 B = 6370.652205 C = 6594.369620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.150 3.850 4 C -0.170 4.170 5 C -0.007 4.007 6 C -0.485 4.485 7 S 1.299 4.701 8 O -0.864 6.864 9 C -0.414 4.414 10 C 0.003 3.997 11 C -0.517 4.517 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.262 1.262 19 C -0.014 4.014 20 C -0.225 4.225 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.028 0.972 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.129 0.871 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -16.877 -12.522 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.105 3.895 4 C -0.189 4.189 5 C -0.026 4.026 6 C -0.581 4.581 7 S 1.499 4.501 8 O -0.859 6.859 9 C -0.552 4.552 10 C -0.036 4.036 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.033 4.033 20 C -0.245 4.245 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.152 0.848 25 H 0.162 0.838 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.190 -16.414 -13.209 21.482 hybrid contribution -2.138 0.716 0.764 2.381 sum -6.327 -15.698 -12.445 21.008 Atomic orbital electron populations 1.23078 0.78287 1.03945 1.01596 1.86063 1.21551 1.27124 1.88306 1.19201 0.92651 0.83917 0.93776 1.20536 0.91232 0.99008 1.08138 1.20721 0.99884 0.89942 0.92080 1.27915 1.01214 1.15869 1.13118 1.69172 1.09934 0.80551 0.90412 1.93050 1.61454 1.61158 1.70254 1.27548 1.06208 1.06171 1.15310 1.19252 0.95152 0.89936 0.99223 1.21035 1.39175 1.05378 0.90038 0.90906 1.25026 0.95370 0.97817 0.95221 1.69900 1.44245 1.25444 1.14445 0.86831 0.78857 0.81713 0.82314 1.20196 1.21111 1.18595 1.20962 0.94084 0.97353 0.90943 1.21304 1.00023 0.92551 1.10591 0.92489 0.92555 0.88144 0.84753 0.83759 0.90332 0.87276 0.95335 0.96551 0.92608 0.85308 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.50 -19.40 -0.20 -3.77 16 3 C 0.15 1.88 6.69 -39.21 -0.26 1.62 16 4 C -0.17 -1.95 9.99 -39.43 -0.39 -2.35 16 5 C -0.01 -0.08 9.75 -39.61 -0.39 -0.47 16 6 C -0.49 -6.89 5.61 -39.56 -0.22 -7.11 16 7 S 1.30 19.97 13.54 -107.50 -1.46 18.51 16 8 O -0.86 -18.22 16.89 -35.23 -0.60 -18.81 16 9 C -0.41 -7.91 5.82 37.16 0.22 -7.70 16 10 C 0.00 0.08 4.05 -27.89 -0.11 -0.04 16 11 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 15 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 19 C -0.01 -0.22 9.44 -39.61 -0.37 -0.59 16 20 C -0.22 -2.94 9.04 -39.43 -0.36 -3.30 16 21 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 22 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 25 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 26 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.11 1.85 8.14 -51.92 -0.42 1.42 16 28 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 29 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.13 2.11 7.45 -52.48 -0.39 1.72 16 32 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -36.98 289.11 -7.11 -44.08 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.98 Total: -2.25 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -1.33 Total: -31.98 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.80 Total: -22.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 19.97 SS G_CDS: -1.46 Total: 18.51 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -36.98 -7.11 -44.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082291244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.695 kcal (2) G-P(sol) polarization free energy of solvation -36.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds