Wall clock time and date at job start Sun Mar 29 2020 23:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38271 * 120.05803 * 359.41293 * 5 4 3 7 7 S 1.76199 * 119.94634 * 180.30266 * 6 5 4 8 8 O 1.42090 * 103.00197 * 156.45024 * 7 6 5 9 9 C 1.81402 * 103.00137 * 270.30511 * 7 6 5 10 10 C 1.53000 * 109.47049 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47156 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00176 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00276 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00497 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99910 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47484 * 89.99869 * 15 13 11 17 17 H 1.48503 * 109.47557 * 209.99961 * 15 13 11 18 18 H 1.48507 * 109.47373 * 329.99735 * 15 13 11 19 19 C 1.38259 * 120.10889 * 0.60974 * 6 5 4 20 20 C 1.38146 * 120.05909 * 359.67363 * 19 6 5 21 21 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 22 22 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 23 23 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 26 26 H 1.08993 * 109.47056 * 299.99786 * 9 7 6 27 27 H 1.09001 * 109.47120 * 59.99769 * 9 7 6 28 28 H 1.09000 * 109.47467 * 299.99779 * 10 9 7 29 29 H 1.09001 * 109.47247 * 59.99970 * 10 9 7 30 30 H 0.96989 * 120.00618 * 180.02562 * 14 13 11 31 31 H 1.08006 * 119.97147 * 179.69573 * 19 6 5 32 32 H 1.07993 * 120.03340 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0005 7 16 4.1020 5.2456 0.0005 8 8 3.1185 6.1056 -0.5583 9 6 4.2885 5.6085 1.7681 10 6 4.9794 6.9627 1.9405 11 6 5.1338 7.2645 3.4088 12 1 4.7755 6.5606 4.1454 13 6 5.7336 8.4387 3.8120 14 7 5.8689 8.7019 5.0934 15 14 6.3541 9.6558 2.5381 16 1 5.2717 10.6149 2.2013 17 1 7.5186 10.3963 3.0868 18 1 6.7657 8.9238 1.3132 19 6 1.9212 3.6047 0.0014 20 6 1.2916 2.3751 0.0010 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 4.0209 0.3798 -0.0014 25 1 5.1346 2.5748 0.0103 26 1 3.3057 5.6392 2.2383 27 1 4.8916 4.8310 2.2369 28 1 5.9623 6.9317 1.4703 29 1 4.3767 7.7405 1.4715 30 1 6.2904 9.5280 5.3771 31 1 1.3343 4.5114 0.0022 32 1 0.2130 2.3202 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082291244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:23 Heat of formation + Delta-G solvation = -82.825643 kcal Electronic energy + Delta-G solvation = -15804.364183 eV Core-core repulsion = 13048.807647 eV Total energy + Delta-G solvation = -2755.556536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10228 -38.39018 -36.79603 -35.68611 -33.22260 -32.17443 -31.25417 -28.28776 -27.51613 -23.88759 -23.44010 -22.59020 -19.39127 -19.18375 -18.66063 -17.25989 -17.14569 -16.76702 -16.27936 -15.78828 -15.63667 -15.55366 -14.83756 -14.70223 -14.53466 -13.85790 -13.74277 -13.59625 -13.27566 -12.87431 -12.81870 -12.49377 -12.17455 -11.97099 -11.87216 -11.74159 -11.53261 -10.94557 -10.78657 -10.07323 -9.65677 -9.15326 -8.30355 -6.35875 -0.05315 0.30038 1.01271 1.38103 1.39673 1.51396 1.88498 2.25144 2.36579 2.61723 2.99617 3.04862 3.68365 3.85252 4.20887 4.26268 4.29237 4.36148 4.38830 4.46290 4.61618 4.65532 4.84943 4.90772 5.04106 5.21131 5.30025 5.35055 5.37208 5.59894 5.69128 6.26161 6.28436 6.71080 7.28487 8.86275 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.041777 B = 0.004394 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.070171 B = 6370.652205 C = 6594.369620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.148 3.852 4 C -0.173 4.173 5 C 0.005 3.995 6 C -0.507 4.507 7 S 1.390 4.610 8 O -0.921 6.921 9 C -0.426 4.426 10 C -0.001 4.001 11 C -0.531 4.531 12 H 0.030 0.970 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.941 3.059 16 H -0.279 1.279 17 H -0.276 1.276 18 H -0.225 1.225 19 C -0.042 4.042 20 C -0.233 4.233 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.127 0.873 24 H 0.164 0.836 25 H 0.192 0.808 26 H 0.047 0.953 27 H 0.130 0.870 28 H 0.061 0.939 29 H 0.002 0.998 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -18.705 -14.755 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.102 3.898 4 C -0.192 4.192 5 C -0.014 4.014 6 C -0.605 4.605 7 S 1.590 4.410 8 O -0.917 6.917 9 C -0.563 4.563 10 C -0.039 4.039 11 C -0.570 4.570 12 H 0.049 0.951 13 C -0.193 4.193 14 N -0.592 5.592 15 Si 0.763 3.237 16 H -0.205 1.205 17 H -0.202 1.202 18 H -0.148 1.148 19 C -0.061 4.061 20 C -0.253 4.253 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.145 0.855 24 H 0.181 0.819 25 H 0.209 0.791 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.079 0.921 29 H 0.021 0.979 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.937 -18.237 -15.429 24.068 hybrid contribution -2.677 1.039 1.501 3.240 sum -5.615 -17.198 -13.929 22.832 Atomic orbital electron populations 1.23379 0.76496 1.05912 1.02051 1.86067 1.23448 1.26349 1.87869 1.19473 0.93439 0.84080 0.92795 1.20989 0.91109 1.00192 1.06899 1.21263 1.02047 0.88573 0.89511 1.27672 1.01057 1.15943 1.15795 1.68397 1.07905 0.79279 0.85399 1.92920 1.63763 1.64156 1.70888 1.27657 1.04394 1.04721 1.19488 1.19225 0.97011 0.91950 0.95743 1.21416 1.38569 1.04772 0.92267 0.95143 1.26052 0.95669 1.00093 0.97518 1.70058 1.45719 1.26434 1.16964 0.85791 0.78276 0.78948 0.80638 1.20537 1.20161 1.14753 1.20948 0.94828 0.97392 0.92947 1.21429 1.01063 0.92137 1.10674 0.92290 0.91861 0.85514 0.81868 0.79081 0.93422 0.85134 0.92098 0.97931 0.92378 0.87835 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.46 10.50 -92.34 -0.97 -7.43 16 3 C 0.15 3.38 6.69 22.51 0.15 3.53 16 4 C -0.17 -3.35 9.99 22.37 0.22 -3.12 16 5 C 0.00 0.09 9.75 22.25 0.22 0.31 16 6 C -0.51 -13.57 5.61 22.28 0.13 -13.44 16 7 S 1.39 40.74 13.54 -56.49 -0.77 39.98 16 8 O -0.92 -38.85 16.89 -148.98 -2.52 -41.37 16 9 C -0.43 -16.23 5.82 71.98 0.42 -15.81 16 10 C 0.00 -0.04 4.05 29.85 0.12 0.08 16 11 C -0.53 -31.14 9.66 25.60 0.25 -30.89 16 12 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 13 C 0.00 0.21 5.47 84.65 0.46 0.68 16 14 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 15 Si 0.94 43.90 27.47 68.60 1.88 45.79 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 19 C -0.04 -1.27 9.44 22.25 0.21 -1.06 16 20 C -0.23 -5.90 9.04 22.37 0.20 -5.69 16 21 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 22 H 0.06 0.73 7.66 -2.39 -0.02 0.72 16 23 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 25 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 28 H 0.06 2.45 7.20 -2.39 -0.02 2.43 16 29 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 30 H 0.27 15.76 8.31 -92.72 -0.77 14.99 16 31 H 0.10 3.60 7.45 -2.91 -0.02 3.57 16 32 H 0.14 2.96 6.30 -2.91 -0.02 2.94 16 Total: -1.00 -83.75 289.11 2.48 -81.28 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.05 Total: 5.94 kcal Atomic # 6 Polarization: -67.60 SS G_CDS: 3.49 Total: -64.11 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -3.49 Total: -48.79 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: 40.74 SS G_CDS: -0.77 Total: 39.98 kcal Total: -83.75 2.48 -81.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082291244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -83.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds