Wall clock time and date at job start Sun Mar 29 2020 23:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48496 * 109.47282 * 240.00286 * 3 2 1 5 5 H 1.48505 * 109.46874 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46933 * 120.00239 * 3 2 1 7 7 C 1.37879 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47431 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47527 * 179.97438 * 11 10 9 13 13 C 1.81404 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47098 * 179.97438 * 13 12 11 15 15 C 1.38244 * 119.97486 * 269.72946 * 14 13 12 16 16 C 1.38202 * 120.02338 * 179.72838 * 15 14 13 17 17 C 1.38457 * 119.97200 * 0.56577 * 16 15 14 18 18 F 1.35099 * 120.02649 * 179.68648 * 17 16 15 19 19 C 1.38455 * 119.95159 * 359.70550 * 17 16 15 20 20 C 1.38200 * 119.97412 * 0.02562 * 19 17 16 21 21 H 0.97001 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47444 * 59.99994 * 9 7 2 23 23 H 1.08998 * 109.46931 * 300.00112 * 9 7 2 24 24 H 1.08996 * 109.47575 * 59.99888 * 10 9 7 25 25 H 1.08998 * 109.47082 * 299.99768 * 10 9 7 26 26 H 1.09007 * 109.47172 * 59.99713 * 11 10 9 27 27 H 1.09007 * 109.46944 * 300.00198 * 11 10 9 28 28 H 1.09002 * 109.47124 * 60.00087 * 13 12 11 29 29 H 1.09001 * 109.46975 * 300.00209 * 13 12 11 30 30 H 1.07996 * 119.98449 * 359.97438 * 15 14 13 31 31 H 1.07995 * 120.01101 * 180.25281 * 16 15 14 32 32 H 1.08001 * 120.01453 * 179.97438 * 19 17 16 33 33 H 1.08008 * 119.98737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 16 2.6592 -6.3658 -0.0007 13 6 1.5810 -7.8246 0.0010 14 6 2.4250 -9.0731 -0.0001 15 6 2.8054 -9.6486 -1.1981 16 6 3.5841 -10.7903 -1.2003 17 6 3.9734 -11.3644 -0.0020 18 9 4.7293 -12.4841 -0.0029 19 6 3.5871 -10.7903 1.1972 20 6 2.8131 -9.6454 1.1970 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6248 -2.5570 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6042 -0.8905 26 1 0.8534 -5.0451 -0.8897 27 1 0.8541 -5.0445 0.8904 28 1 0.9509 -7.8117 -0.8883 29 1 0.9528 -7.8110 0.8917 30 1 2.4973 -9.2035 -2.1326 31 1 3.8846 -11.2374 -2.1363 32 1 3.8898 -11.2375 2.1326 33 1 2.5112 -9.1977 2.1324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160977612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:18 Heat of formation + Delta-G solvation = -49.005642 kcal Electronic energy + Delta-G solvation = -14932.824617 eV Core-core repulsion = 12191.107416 eV Total energy + Delta-G solvation = -2741.717201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.13189 -39.35366 -34.47535 -32.73102 -32.04166 -31.41462 -27.64446 -26.85193 -23.43206 -23.33248 -21.81954 -20.23960 -17.92526 -16.64905 -16.58149 -16.00047 -15.85705 -15.52813 -14.70371 -14.58475 -14.36276 -13.96971 -13.81909 -13.73631 -12.74615 -12.56259 -12.39294 -12.17684 -11.73533 -11.54908 -11.27015 -10.92964 -10.86849 -10.57550 -9.90720 -9.81171 -9.38259 -9.33430 -9.15146 -8.70875 -8.38202 -7.48922 -6.03387 -4.06042 0.68612 0.96881 1.96457 2.81508 3.32633 3.36640 3.39688 3.41729 3.99591 4.40543 4.40731 4.44056 4.62329 4.83837 4.99461 5.24842 5.32514 5.36575 5.47592 5.60345 5.63598 5.72662 5.84428 5.94422 6.09834 6.22413 6.52809 6.59994 6.69208 6.99507 7.61046 7.73238 7.95375 8.37244 9.00237 9.58269 11.07935 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.066735 B = 0.002871 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.470811 B = 9751.251542 C = 9849.888830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.268 6.268 13 C -0.052 4.052 14 C -0.075 4.075 15 C -0.074 4.074 16 C -0.153 4.153 17 C 0.096 3.904 18 F -0.142 7.142 19 C -0.153 4.153 20 C -0.074 4.074 21 H 0.262 0.738 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -21.989 0.001 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.038 6.038 13 C -0.199 4.199 14 C -0.077 4.077 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.076 3.924 18 F -0.120 7.120 19 C -0.172 4.172 20 C -0.093 4.093 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.640 -21.847 -0.001 22.334 hybrid contribution -0.777 0.702 0.002 1.048 sum 3.862 -21.144 0.001 21.494 Atomic orbital electron populations 1.69947 1.06082 1.26818 1.50715 1.25020 0.94866 0.99304 0.95213 0.86628 0.79570 0.82947 0.78706 1.20172 1.21265 1.20178 1.21188 0.93105 0.90876 1.50847 0.92584 1.19094 0.93784 0.90830 0.97382 1.21467 0.99169 0.91155 1.01607 1.23664 0.98906 0.95317 1.04408 1.87148 1.18144 1.00401 1.98085 1.22251 0.98766 0.93083 1.05846 1.19368 0.99402 0.95357 0.93536 1.20943 0.95980 0.94208 0.98200 1.21123 1.01043 0.97829 0.97206 1.17752 0.94810 0.85064 0.94796 1.91495 1.73687 1.49408 1.97457 1.21124 1.01113 0.97777 0.97193 1.20945 0.95983 0.94179 0.98221 0.92886 0.96432 0.96441 0.92379 0.92375 0.90492 0.90485 0.89141 0.89136 0.84647 0.84601 0.84601 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16 10 C -0.09 -1.95 5.16 -26.74 -0.14 -2.09 16 11 C -0.08 -1.25 5.94 37.16 0.22 -1.03 16 12 S -0.27 -3.97 21.72 -107.50 -2.33 -6.31 16 13 C -0.05 -0.57 6.07 36.01 0.22 -0.35 16 14 C -0.08 -0.78 5.14 -104.62 -0.54 -1.32 16 15 C -0.07 -0.71 9.70 -39.59 -0.38 -1.09 16 16 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 17 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 18 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 19 C -0.15 -1.43 10.03 -39.52 -0.40 -1.83 16 20 C -0.07 -0.71 9.70 -39.59 -0.38 -1.09 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.09 0.89 8.08 -51.92 -0.42 0.47 16 29 H 0.09 0.89 8.09 -51.92 -0.42 0.47 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -30.11 305.04 -9.23 -39.34 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.61 Total: -3.85 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.63 Total: -22.88 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.33 Total: -6.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.11 -9.23 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160977612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds