Wall clock time and date at job start Sun Mar 29 2020 23:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48496 * 109.47282 * 240.00286 * 3 2 1 5 5 H 1.48505 * 109.46874 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46933 * 120.00239 * 3 2 1 7 7 C 1.37879 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47431 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47527 * 179.97438 * 11 10 9 13 13 C 1.81404 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47098 * 179.97438 * 13 12 11 15 15 C 1.38244 * 119.97486 * 269.72946 * 14 13 12 16 16 C 1.38202 * 120.02338 * 179.72838 * 15 14 13 17 17 C 1.38457 * 119.97200 * 0.56577 * 16 15 14 18 18 F 1.35099 * 120.02649 * 179.68648 * 17 16 15 19 19 C 1.38455 * 119.95159 * 359.70550 * 17 16 15 20 20 C 1.38200 * 119.97412 * 0.02562 * 19 17 16 21 21 H 0.97001 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47444 * 59.99994 * 9 7 2 23 23 H 1.08998 * 109.46931 * 300.00112 * 9 7 2 24 24 H 1.08996 * 109.47575 * 59.99888 * 10 9 7 25 25 H 1.08998 * 109.47082 * 299.99768 * 10 9 7 26 26 H 1.09007 * 109.47172 * 59.99713 * 11 10 9 27 27 H 1.09007 * 109.46944 * 300.00198 * 11 10 9 28 28 H 1.09002 * 109.47124 * 60.00087 * 13 12 11 29 29 H 1.09001 * 109.46975 * 300.00209 * 13 12 11 30 30 H 1.07996 * 119.98449 * 359.97438 * 15 14 13 31 31 H 1.07995 * 120.01101 * 180.25281 * 16 15 14 32 32 H 1.08001 * 120.01453 * 179.97438 * 19 17 16 33 33 H 1.08008 * 119.98737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 16 2.6592 -6.3658 -0.0007 13 6 1.5810 -7.8246 0.0010 14 6 2.4250 -9.0731 -0.0001 15 6 2.8054 -9.6486 -1.1981 16 6 3.5841 -10.7903 -1.2003 17 6 3.9734 -11.3644 -0.0020 18 9 4.7293 -12.4841 -0.0029 19 6 3.5871 -10.7903 1.1972 20 6 2.8131 -9.6454 1.1970 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6248 -2.5570 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6042 -0.8905 26 1 0.8534 -5.0451 -0.8897 27 1 0.8541 -5.0445 0.8904 28 1 0.9509 -7.8117 -0.8883 29 1 0.9528 -7.8110 0.8917 30 1 2.4973 -9.2035 -2.1326 31 1 3.8846 -11.2374 -2.1363 32 1 3.8898 -11.2375 2.1326 33 1 2.5112 -9.1977 2.1324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160977612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:17 Heat of formation + Delta-G solvation = -63.070016 kcal Electronic energy + Delta-G solvation = -14933.434494 eV Core-core repulsion = 12191.107416 eV Total energy + Delta-G solvation = -2742.327078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.91897 -40.08275 -36.35334 -34.03994 -33.51702 -32.12131 -29.44482 -27.78121 -25.32461 -24.04421 -22.72417 -21.92120 -18.69007 -18.54820 -17.41665 -17.21767 -16.64121 -16.57114 -16.37583 -16.20624 -15.20215 -14.98076 -14.80372 -14.45459 -14.42441 -13.85413 -13.78746 -13.27451 -13.11370 -12.84163 -12.71130 -12.67896 -12.34335 -11.96999 -11.64230 -11.44826 -11.21658 -10.87461 -10.55922 -10.08873 -9.52950 -8.64961 -8.21283 -6.32304 -0.14585 0.26357 0.91985 1.40655 1.43335 1.51377 1.67777 2.41083 2.67298 3.12101 3.26014 3.60991 3.70174 3.96125 4.06092 4.08722 4.12339 4.29761 4.53011 4.57940 4.61100 4.83224 4.96374 4.97445 4.99291 5.13428 5.14193 5.22063 5.48500 5.49001 5.68864 5.82380 5.87970 6.22558 6.83369 7.36919 8.90222 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.066735 B = 0.002871 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.470811 B = 9751.251542 C = 9849.888830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.069 4.069 12 S -0.289 6.289 13 C -0.038 4.038 14 C -0.089 4.089 15 C -0.077 4.077 16 C -0.156 4.156 17 C 0.082 3.918 18 F -0.148 7.148 19 C -0.156 4.156 20 C -0.077 4.077 21 H 0.265 0.735 22 H -0.003 1.003 23 H -0.003 1.003 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -22.649 0.000 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.217 4.217 12 S -0.059 6.059 13 C -0.185 4.185 14 C -0.090 4.090 15 C -0.097 4.097 16 C -0.175 4.175 17 C 0.062 3.938 18 F -0.126 7.126 19 C -0.175 4.175 20 C -0.097 4.097 21 H 0.073 0.927 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.306 -22.507 -0.001 23.124 hybrid contribution -0.983 0.780 0.002 1.255 sum 4.323 -21.727 0.001 22.153 Atomic orbital electron populations 1.70070 1.07703 1.27934 1.51488 1.25949 0.95788 1.03264 0.94623 0.85520 0.78327 0.78154 0.79193 1.19219 1.20671 1.19228 1.21652 0.93548 0.92420 1.50876 0.92368 1.18972 0.94164 0.92325 0.95304 1.21164 0.98009 0.91706 1.01144 1.23368 0.98862 0.94552 1.04929 1.87163 1.18904 1.01634 1.98196 1.22300 0.98120 0.90850 1.07236 1.19431 1.00097 0.95318 0.94192 1.21147 0.95691 0.94213 0.98600 1.21341 1.00657 0.97698 0.97771 1.18004 0.95101 0.85142 0.95527 1.91481 1.73903 1.49747 1.97517 1.21341 1.00727 0.97645 0.97756 1.21149 0.95694 0.94191 0.98623 0.92660 0.98455 0.98463 0.92778 0.92774 0.90011 0.90003 0.87816 0.87812 0.83356 0.82953 0.82954 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.08 -3.37 5.16 30.59 0.16 -3.21 16 11 C -0.07 -2.26 5.94 71.98 0.43 -1.83 16 12 S -0.29 -8.16 21.72 -56.49 -1.23 -9.39 16 13 C -0.04 -0.74 6.07 71.24 0.43 -0.31 16 14 C -0.09 -1.65 5.14 -19.86 -0.10 -1.75 16 15 C -0.08 -1.32 9.70 22.26 0.22 -1.10 16 16 C -0.16 -2.63 10.03 22.31 0.22 -2.41 16 17 C 0.08 1.54 7.30 22.37 0.16 1.70 16 18 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 19 C -0.16 -2.63 10.03 22.31 0.22 -2.41 16 20 C -0.08 -1.32 9.70 22.26 0.22 -1.10 16 21 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.10 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -64.11 305.04 5.74 -58.37 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.08 Total: 4.13 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 2.80 Total: -41.10 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.23 Total: -9.39 kcal Total: -64.11 5.74 -58.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160977612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.701 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds