Wall clock time and date at job start Sun Mar 29 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 H 1.09006 * 109.47082 * 55.00521 * 3 2 1 5 5 C 1.50699 * 109.46932 * 175.00035 * 3 2 1 6 6 H 1.07999 * 119.99778 * 120.00312 * 5 3 2 7 7 C 1.37873 * 120.00165 * 299.99912 * 5 3 2 8 8 N 1.31523 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00170 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47212 * 120.00313 * 9 7 5 12 12 H 1.48499 * 109.47030 * 240.00125 * 9 7 5 13 13 O 1.45201 * 109.47129 * 295.00015 * 3 2 1 14 14 C 1.34800 * 116.99753 * 90.00333 * 13 3 2 15 15 O 1.21563 * 120.00240 * 359.97438 * 14 13 3 16 16 C 1.47032 * 119.99843 * 179.72413 * 14 13 3 17 17 C 1.36101 * 123.47379 * 359.97438 * 16 14 13 18 18 S 1.70448 * 110.80769 * 179.91526 * 17 16 14 19 19 C 1.75497 * 92.45257 * 0.30349 * 18 17 16 20 20 C 1.32739 * 110.60340 * 359.82499 * 19 18 17 21 21 C 1.50694 * 123.45954 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47206 * 299.99726 * 1 2 3 24 24 H 1.09005 * 109.47526 * 59.99902 * 1 2 3 25 25 H 1.09002 * 109.46868 * 239.99951 * 2 1 3 26 26 H 1.08996 * 109.47053 * 120.00465 * 2 1 3 27 27 H 0.97002 * 119.99758 * 179.97438 * 8 7 5 28 28 H 1.08005 * 124.59844 * 0.03833 * 17 16 14 29 29 H 1.08007 * 124.70360 * 179.83415 * 19 18 17 30 30 H 1.09002 * 109.47403 * 269.98243 * 21 20 19 31 31 H 1.09008 * 109.47319 * 29.98335 * 21 20 19 32 32 H 1.09001 * 109.47435 * 149.97887 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3365 2.1729 9 14 6.0049 0.8812 1.3818 10 1 6.5986 1.5461 0.1942 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5175 1.4629 13 8 1.6558 2.0917 -1.2407 14 6 0.4677 2.7281 -1.2560 15 8 -0.2285 2.7398 -0.2595 16 6 0.0162 3.4130 -2.4762 17 6 0.7401 3.4494 -3.6281 18 16 -0.0858 4.3252 -4.8348 19 6 -1.4386 4.6638 -3.7693 20 6 -1.2388 4.1220 -2.5741 21 6 -2.2204 4.2344 -1.4363 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8293 -0.0619 2.9495 28 1 1.7060 2.9846 -3.7604 29 1 -2.3128 5.2338 -4.0475 30 1 -1.9946 5.1238 -0.8481 31 1 -3.2321 4.3099 -1.8353 32 1 -2.1449 3.3508 -0.8026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187949832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:22 Heat of formation + Delta-G solvation = -86.279400 kcal Electronic energy + Delta-G solvation = -16747.513712 eV Core-core repulsion = 13991.807410 eV Total energy + Delta-G solvation = -2755.706302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37498 -38.78910 -37.25686 -35.51963 -33.41074 -32.15140 -29.41812 -28.59338 -25.94787 -24.96747 -22.87004 -21.53435 -19.91303 -18.80578 -18.50359 -18.23824 -17.15215 -16.99308 -16.29671 -15.09394 -14.95529 -14.78469 -14.51603 -14.13212 -13.85576 -13.63771 -13.36732 -13.30641 -13.12688 -13.01118 -12.84447 -12.82765 -12.57013 -12.14272 -11.86219 -11.76763 -11.43500 -11.12350 -10.82927 -10.54314 -9.89511 -9.29553 -8.28978 -6.45915 -0.29920 0.58346 0.87264 0.92052 1.40428 1.41087 1.54800 2.07257 2.15441 2.43107 3.00633 3.74636 4.09570 4.20293 4.35195 4.37852 4.41687 4.55757 4.65729 4.76977 4.80790 4.83376 4.98829 5.06114 5.20121 5.26589 5.32430 5.47951 5.59168 5.65883 5.96706 6.11855 6.59378 7.00920 7.26153 8.78279 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.005842 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.124183 B = 4792.001639 C = 5334.926059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.270 1.270 13 O -0.362 6.362 14 C 0.507 3.493 15 O -0.534 6.534 16 C -0.179 4.179 17 C -0.194 4.194 18 S 0.269 5.731 19 C -0.238 4.238 20 C -0.076 4.076 21 C -0.098 4.098 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.271 0.729 28 H 0.177 0.823 29 H 0.205 0.795 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 7.203 -13.846 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.195 1.195 13 O -0.279 6.279 14 C 0.352 3.648 15 O -0.427 6.427 16 C -0.195 4.195 17 C -0.332 4.332 18 S 0.537 5.463 19 C -0.372 4.372 20 C -0.086 4.086 21 C -0.157 4.157 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.195 0.805 29 H 0.222 0.778 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.947 7.461 -14.896 18.458 hybrid contribution 0.674 -0.698 2.335 2.529 sum -7.273 6.763 -12.560 16.013 Atomic orbital electron populations 1.21699 0.96306 1.00537 1.00028 1.21858 0.94455 0.98052 1.02281 1.20385 0.94563 0.89253 0.78480 0.97545 1.21343 0.90427 1.39994 1.06951 0.91766 1.25805 1.04291 0.93817 0.94284 1.70024 1.37396 1.37904 1.09891 0.85157 0.77615 0.78395 0.78376 1.18871 1.20076 1.19524 1.86521 1.35392 1.63277 1.42676 1.21040 0.79723 0.76053 0.88029 1.90716 1.55470 1.60045 1.36462 1.19632 0.98647 1.08260 0.92978 1.26121 1.05318 1.03584 0.98148 1.82556 1.08087 1.44782 1.10917 1.25666 1.05976 1.09254 0.96342 1.19900 0.93684 0.97506 0.97469 1.20614 0.97038 1.02914 0.95127 0.91962 0.94396 0.94803 0.93721 0.89405 0.91979 0.80516 0.77777 0.91230 0.88760 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.56 71.98 0.62 -5.26 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.23 12.75 2.25 29.85 0.07 12.82 16 4 H 0.01 0.43 7.16 -2.38 -0.02 0.41 16 5 C -0.55 -31.90 8.90 25.60 0.23 -31.67 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.98 43.40 29.54 68.60 2.03 45.43 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 O -0.36 -18.36 9.46 -57.11 -0.54 -18.90 16 14 C 0.51 23.17 6.37 70.13 0.45 23.62 16 15 O -0.53 -26.38 11.40 19.63 0.22 -26.16 16 16 C -0.18 -6.32 5.98 -19.88 -0.12 -6.44 16 17 C -0.19 -5.51 10.55 67.32 0.71 -4.80 16 18 S 0.27 4.92 23.02 -56.49 -1.30 3.62 16 19 C -0.24 -4.71 10.91 66.65 0.73 -3.99 16 20 C -0.08 -2.16 6.01 -19.45 -0.12 -2.28 16 21 C -0.10 -2.69 9.54 71.23 0.68 -2.01 16 22 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 24 H 0.03 1.51 6.06 -2.38 -0.01 1.49 16 25 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 4.94 5.95 -2.39 -0.01 4.93 16 27 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.18 4.99 8.02 -2.91 -0.02 4.97 16 29 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.87 8.13 -2.38 -0.02 1.85 16 32 H 0.06 2.06 6.03 -2.39 -0.01 2.05 16 Total: -1.00 -68.09 283.62 5.63 -62.46 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.12 Total: 11.39 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.86 Total: -25.07 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.24 Total: -52.76 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.32 Total: -45.06 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.30 Total: 3.62 kcal Total: -68.09 5.63 -62.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187949832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.824 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds