Wall clock time and date at job start Sun Mar 29 2020 23:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46829 * 299.99640 * 3 2 1 6 6 H 1.48494 * 109.47402 * 60.00080 * 3 2 1 7 7 C 1.37879 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46923 * 179.97438 * 9 7 2 11 11 S 1.81410 * 109.47117 * 179.97438 * 10 9 7 12 12 C 1.81393 * 102.99926 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47124 * 179.97438 * 12 11 10 14 14 N 1.29946 * 126.28876 * 270.02960 * 13 12 11 15 15 O 1.21297 * 110.25321 * 179.68528 * 14 13 12 16 16 C 1.33646 * 109.80764 * 0.46050 * 15 14 13 17 17 C 1.50706 * 126.54918 * 179.80385 * 16 15 14 18 18 C 1.53002 * 117.49668 * 59.69212 * 17 16 15 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 17 16 20 20 N 1.31125 * 106.90001 * 359.54417 * 16 15 14 21 21 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47602 * 59.99580 * 9 7 2 23 23 H 1.09000 * 109.47277 * 299.99977 * 9 7 2 24 24 H 1.09003 * 109.47212 * 60.00106 * 10 9 7 25 25 H 1.08996 * 109.47019 * 299.99686 * 10 9 7 26 26 H 1.09002 * 109.47400 * 60.00147 * 12 11 10 27 27 H 1.09003 * 109.47204 * 299.99752 * 12 11 10 28 28 H 1.09000 * 115.55924 * 205.37617 * 17 16 15 29 29 H 1.09002 * 117.49918 * 145.01964 * 18 17 16 30 30 H 1.09002 * 117.49754 * 0.02562 * 18 17 16 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 6 2.6649 -6.4702 0.0020 13 6 2.0633 -7.8520 0.0033 14 7 1.7560 -8.5560 1.0514 15 8 1.2850 -9.6227 0.7174 16 6 1.2551 -9.7069 -0.6161 17 6 0.7489 -10.8693 -1.4308 18 6 -0.7126 -11.2809 -1.2423 19 6 0.4074 -12.1607 -0.6834 20 7 1.7452 -8.5827 -1.0801 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 3.2810 -6.3418 0.8920 27 1 3.2811 -6.3427 -0.8881 28 1 1.1732 -10.9632 -2.4304 29 1 -1.2498 -11.6456 -2.1178 30 1 -1.3081 -10.7106 -0.5292 31 1 0.5490 -12.1691 0.3974 32 1 0.6068 -13.1045 -1.1910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190963619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:47 Heat of formation + Delta-G solvation = 82.407854 kcal Electronic energy + Delta-G solvation = -15297.253193 eV Core-core repulsion = 12581.154470 eV Total energy + Delta-G solvation = -2716.098722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.71173 -37.87295 -36.16153 -33.71242 -32.67676 -30.90219 -29.31339 -25.30687 -25.22851 -23.62924 -22.87678 -21.40470 -20.57787 -18.27420 -17.66164 -16.67145 -16.54489 -15.66062 -15.15700 -14.53144 -14.31441 -14.09319 -13.43198 -13.38168 -12.84185 -12.42287 -12.26283 -12.09020 -11.96781 -11.60470 -11.17691 -11.13855 -11.08041 -11.04543 -10.58926 -10.23568 -9.94975 -9.71244 -9.45450 -9.09787 -8.44036 -7.23855 -6.07581 -4.12390 0.92411 1.57249 2.53908 2.60239 3.06284 3.19438 3.27794 3.35294 3.39028 3.48782 3.85664 4.22492 4.36992 4.40722 4.48014 4.90563 5.14732 5.18680 5.22502 5.28144 5.40641 5.50497 5.58653 5.63782 5.88508 5.94386 6.12233 6.67373 7.54319 7.61889 7.88382 8.07384 8.24759 8.92679 9.51650 11.03300 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.063663 B = 0.003207 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.708135 B = 8730.143516 C = 8915.534278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.253 6.253 12 C -0.010 4.010 13 C 0.197 3.803 14 N -0.370 5.370 15 O 0.079 5.921 16 C 0.204 3.796 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.159 4.159 20 N -0.465 5.465 21 H 0.262 0.738 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -23.686 -2.258 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.207 4.207 11 S -0.027 6.027 12 C -0.159 4.159 13 C -0.076 4.076 14 N -0.078 5.078 15 O 0.019 5.981 16 C -0.017 4.017 17 C -0.098 4.098 18 C -0.191 4.191 19 C -0.197 4.197 20 N -0.198 5.198 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.168 0.832 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.200 -23.161 -1.744 23.257 hybrid contribution 1.704 1.111 -0.076 2.035 sum 2.904 -22.050 -1.820 22.314 Atomic orbital electron populations 1.69987 1.06093 1.26813 1.49972 1.25024 0.94913 0.99363 0.95012 0.86445 0.79985 0.83349 0.77691 1.19669 1.20865 1.20872 1.21110 0.93060 0.90098 1.51793 0.92298 1.18917 0.93423 0.89122 0.98688 1.23796 1.01601 0.91789 1.03560 1.87248 1.15041 1.02371 1.98079 1.21434 0.99778 0.87697 1.07037 1.24881 1.00537 0.98640 0.83503 1.74675 1.15519 0.94307 1.23266 1.85270 1.58710 1.29559 1.24564 1.27651 0.96316 0.95696 0.82002 1.20306 1.00792 0.89826 0.98890 1.23189 0.89556 1.02106 1.04251 1.23190 1.01719 0.93471 1.01323 1.71850 1.16666 1.02239 1.29036 0.92790 0.95403 0.95442 0.90996 0.90906 0.87684 0.87217 0.83249 0.86741 0.87750 0.87440 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.06 -1.26 5.88 37.16 0.22 -1.04 16 11 S -0.25 -4.98 21.72 -107.50 -2.33 -7.31 16 12 C -0.01 -0.16 6.57 36.01 0.24 0.07 16 13 C 0.20 3.16 7.48 -156.37 -1.17 1.99 16 14 N -0.37 -5.87 12.16 30.90 0.38 -5.50 16 15 O 0.08 1.06 11.08 18.09 0.20 1.26 16 16 C 0.20 2.46 7.97 -13.06 -0.10 2.36 16 17 C -0.08 -0.58 6.33 -91.73 -0.58 -1.16 16 18 C -0.15 -0.86 10.23 -26.73 -0.27 -1.14 16 19 C -0.16 -0.78 10.18 -26.70 -0.27 -1.05 16 20 N -0.46 -7.02 11.55 -9.87 -0.11 -7.14 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.10 1.49 8.14 -51.92 -0.42 1.06 16 27 H 0.11 1.55 8.14 -51.92 -0.42 1.13 16 28 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 0.56 8.01 -51.92 -0.42 0.14 16 32 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -32.47 300.33 -8.31 -40.78 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -4.18 Total: -4.57 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.49 Total: -12.45 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 1.00 Total: -38.68 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.33 Total: -7.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.47 -8.31 -40.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190963619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.184 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds