Wall clock time and date at job start Sun Mar 29 2020 23:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46740 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46829 * 299.99640 * 3 2 1 6 6 H 1.48494 * 109.47402 * 60.00080 * 3 2 1 7 7 C 1.37879 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46923 * 179.97438 * 9 7 2 11 11 S 1.81410 * 109.47117 * 179.97438 * 10 9 7 12 12 C 1.81393 * 102.99926 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47124 * 179.97438 * 12 11 10 14 14 N 1.29946 * 126.28876 * 270.02960 * 13 12 11 15 15 O 1.21297 * 110.25321 * 179.68528 * 14 13 12 16 16 C 1.33646 * 109.80764 * 0.46050 * 15 14 13 17 17 C 1.50706 * 126.54918 * 179.80385 * 16 15 14 18 18 C 1.53002 * 117.49668 * 59.69212 * 17 16 15 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 17 16 20 20 N 1.31125 * 106.90001 * 359.54417 * 16 15 14 21 21 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47602 * 59.99580 * 9 7 2 23 23 H 1.09000 * 109.47277 * 299.99977 * 9 7 2 24 24 H 1.09003 * 109.47212 * 60.00106 * 10 9 7 25 25 H 1.08996 * 109.47019 * 299.99686 * 10 9 7 26 26 H 1.09002 * 109.47400 * 60.00147 * 12 11 10 27 27 H 1.09003 * 109.47204 * 299.99752 * 12 11 10 28 28 H 1.09000 * 115.55924 * 205.37617 * 17 16 15 29 29 H 1.09002 * 117.49918 * 145.01964 * 18 17 16 30 30 H 1.09002 * 117.49754 * 0.02562 * 18 17 16 31 31 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 32 32 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 6 2.6649 -6.4702 0.0020 13 6 2.0633 -7.8520 0.0033 14 7 1.7560 -8.5560 1.0514 15 8 1.2850 -9.6227 0.7174 16 6 1.2551 -9.7069 -0.6161 17 6 0.7489 -10.8693 -1.4308 18 6 -0.7126 -11.2809 -1.2423 19 6 0.4074 -12.1607 -0.6834 20 7 1.7452 -8.5827 -1.0801 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 3.2810 -6.3418 0.8920 27 1 3.2811 -6.3427 -0.8881 28 1 1.1732 -10.9632 -2.4304 29 1 -1.2498 -11.6456 -2.1178 30 1 -1.3081 -10.7106 -0.5292 31 1 0.5490 -12.1691 0.3974 32 1 0.6068 -13.1045 -1.1910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190963619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:47 Heat of formation + Delta-G solvation = 61.741383 kcal Electronic energy + Delta-G solvation = -15298.149358 eV Core-core repulsion = 12581.154470 eV Total energy + Delta-G solvation = -2716.994888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.81948 -38.40992 -37.27139 -35.80894 -33.74088 -32.95162 -30.53366 -27.36343 -26.08145 -24.73591 -23.29592 -23.22823 -21.63588 -19.38961 -18.71444 -18.65011 -17.40325 -17.19136 -16.53092 -15.93209 -15.75588 -15.35086 -15.01073 -14.60358 -14.04693 -13.85465 -13.62133 -13.28600 -13.03703 -12.95856 -12.52012 -12.41673 -12.27383 -12.19956 -12.10459 -11.74959 -11.53260 -11.32545 -10.99689 -10.66632 -10.63223 -8.81605 -8.24912 -6.38659 -0.19777 0.34439 1.28691 1.41504 1.41576 1.55101 1.57590 1.67747 2.32345 2.39718 2.69987 2.92426 3.08810 3.60417 3.70269 3.93182 3.97366 4.17351 4.22375 4.29332 4.32124 4.52580 4.77858 4.80710 4.82630 4.94920 5.08592 5.22109 5.35672 5.45200 5.71611 6.07787 6.75952 7.00095 7.31117 8.87358 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.063663 B = 0.003207 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.708135 B = 8730.143516 C = 8915.534278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.044 3.956 10 C -0.045 4.045 11 S -0.292 6.292 12 C 0.007 3.993 13 C 0.181 3.819 14 N -0.390 5.390 15 O 0.083 5.917 16 C 0.218 3.782 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.138 4.138 20 N -0.495 5.495 21 H 0.266 0.734 22 H -0.003 1.003 23 H -0.004 1.004 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -25.050 -2.755 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.005 3.995 10 C -0.193 4.193 11 S -0.066 6.066 12 C -0.142 4.142 13 C -0.092 4.092 14 N -0.098 5.098 15 O 0.022 5.978 16 C -0.001 4.001 17 C -0.121 4.121 18 C -0.187 4.187 19 C -0.176 4.176 20 N -0.228 5.228 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.184 0.816 29 H 0.156 0.844 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.476 -24.532 -2.247 24.759 hybrid contribution 1.235 1.342 0.066 1.825 sum 3.711 -23.190 -2.180 23.587 Atomic orbital electron populations 1.70130 1.08051 1.28049 1.51013 1.26058 0.95799 1.03667 0.94345 0.85261 0.79100 0.78066 0.77778 1.18105 1.20333 1.20382 1.21558 0.93833 0.91062 1.51486 0.91093 1.18688 0.93747 0.91399 0.95669 1.23438 1.00201 0.90810 1.04820 1.87320 1.17758 1.03301 1.98251 1.21414 0.97993 0.86039 1.08753 1.24943 1.01341 0.98916 0.84005 1.74646 1.16148 0.95113 1.23873 1.85231 1.58457 1.28737 1.25363 1.28567 0.94098 0.95938 0.81526 1.20722 1.02339 0.89611 0.99420 1.23323 0.88667 1.01764 1.04963 1.23351 0.99699 0.93308 1.01199 1.71844 1.18371 1.03417 1.29154 0.92551 0.98471 0.98572 0.89689 0.89531 0.86024 0.85480 0.81580 0.84394 0.89090 0.87824 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 9 C 0.04 2.36 4.98 29.85 0.15 2.51 16 10 C -0.04 -1.89 5.88 71.98 0.42 -1.47 16 11 S -0.29 -11.58 21.72 -56.49 -1.23 -12.80 16 12 C 0.01 0.21 6.57 71.24 0.47 0.67 16 13 C 0.18 5.70 7.48 138.46 1.04 6.74 16 14 N -0.39 -12.22 12.16 -60.32 -0.73 -12.95 16 15 O 0.08 2.17 11.08 74.81 0.83 3.00 16 16 C 0.22 5.05 7.97 88.38 0.70 5.76 16 17 C -0.10 -1.28 6.33 -11.51 -0.07 -1.35 16 18 C -0.15 -1.34 10.23 30.60 0.31 -1.02 16 19 C -0.14 -0.94 10.18 30.62 0.31 -0.63 16 20 N -0.49 -14.66 11.55 -303.19 -3.50 -18.16 16 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 25 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 27 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.14 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 0.83 8.01 -2.38 -0.02 0.81 16 32 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -71.58 300.33 2.82 -68.76 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.11 Total: 1.94 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.03 Total: -18.63 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.95 Total: -88.21 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.83 Total: 3.00 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -11.58 SS G_CDS: -1.23 Total: -12.80 kcal Total: -71.58 2.82 -68.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190963619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.501 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds