Wall clock time and date at job start Sun Mar 29 2020 23:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33382 * 122.55801 * 2 1 4 4 S 1.75857 * 109.70069 * 179.72604 * 3 2 1 5 5 C 1.75871 * 91.04411 * 0.02562 * 4 3 2 6 6 C 1.33773 * 109.59961 * 359.97438 * 5 4 3 7 7 N 1.40812 * 122.61889 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99977 * 353.80052 * 7 6 5 9 9 O 1.21611 * 119.99579 * 5.40450 * 8 7 6 10 10 N 1.34768 * 120.00329 * 185.39950 * 8 7 6 11 11 C 1.46507 * 120.00236 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47275 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.46823 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00431 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99687 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00362 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99925 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47495 * 59.99614 * 17 15 13 19 19 H 1.48499 * 109.47426 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47014 * 299.99495 * 17 15 13 21 21 H 1.08997 * 109.47394 * 90.02581 * 1 2 3 22 22 H 1.08998 * 109.47281 * 210.02929 * 1 2 3 23 23 H 1.08997 * 109.47072 * 330.02632 * 1 2 3 24 24 H 1.07999 * 125.14497 * 359.76530 * 3 2 1 25 25 H 1.07998 * 125.19698 * 179.97438 * 5 4 3 26 26 H 0.96999 * 120.00269 * 173.79882 * 7 6 5 27 27 H 0.96996 * 120.00176 * 0.02562 * 10 8 7 28 28 H 1.09000 * 109.46419 * 300.00058 * 11 10 8 29 29 H 1.08998 * 109.47223 * 59.99744 * 11 10 8 30 30 H 1.09001 * 109.46851 * 299.99940 * 12 11 10 31 31 H 1.08998 * 109.47262 * 59.99697 * 12 11 10 32 32 H 0.96998 * 120.00874 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1242 0.0000 4 16 3.9393 0.7329 0.0079 5 6 3.5792 -0.9886 0.0101 6 6 2.2538 -1.1698 0.0056 7 7 1.6624 -2.4477 0.0055 8 6 2.4330 -3.5469 -0.1160 9 8 3.6445 -3.4419 -0.1266 10 7 1.8610 -4.7622 -0.2256 11 6 2.6986 -5.9570 -0.3571 12 6 1.8070 -7.1957 -0.4642 13 6 2.6686 -8.4245 -0.6001 14 1 3.7446 -8.3314 -0.6088 15 6 2.0833 -9.6678 -0.7134 16 7 0.7731 -9.7813 -0.7024 17 14 3.1514 -11.1911 -0.8811 18 1 4.0282 -11.3146 0.3109 19 1 2.2860 -12.3933 -0.9865 20 1 3.9890 -11.0764 -2.1020 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5134 24 1 1.8150 2.1234 -0.0036 25 1 4.3156 -1.7785 0.0144 26 1 0.7005 -2.5371 0.0929 27 1 0.8947 -4.8459 -0.2174 28 1 3.3127 -5.8731 -1.2537 29 1 3.3428 -6.0471 0.5175 30 1 1.1925 -7.2796 0.4321 31 1 1.1630 -7.1053 -1.3390 32 1 0.3613 -10.6559 -0.7817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273182043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:21 Heat of formation + Delta-G solvation = -1.904850 kcal Electronic energy + Delta-G solvation = -15802.047691 eV Core-core repulsion = 13082.292895 eV Total energy + Delta-G solvation = -2719.754796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45123 -38.11644 -35.00636 -33.85164 -32.85005 -30.69309 -29.45060 -27.14808 -24.87814 -23.28830 -21.10422 -20.70647 -19.35888 -18.41693 -17.00969 -16.39027 -15.75168 -15.47776 -14.69664 -14.54674 -14.20433 -14.11642 -13.67247 -13.32156 -13.06371 -12.31952 -12.29265 -12.25781 -12.09907 -11.23849 -11.05878 -10.94377 -10.67346 -10.50758 -10.29292 -9.78756 -9.56772 -9.29402 -8.71275 -8.53536 -8.40850 -7.71789 -6.11627 -4.14678 1.04711 1.67995 1.99962 2.54869 2.96044 3.30301 3.34163 3.37774 3.54123 4.35421 4.51690 4.76278 4.90888 5.15142 5.25562 5.37547 5.50876 5.75762 5.90296 6.05258 6.13907 6.30911 6.32341 6.70547 6.74946 6.91148 7.13597 7.51008 7.58183 7.86662 8.16218 8.28385 8.76602 8.91249 9.50290 10.99970 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.051881 B = 0.003553 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.563883 B = 7879.279425 C = 8387.863699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.118 4.118 3 C -0.209 4.209 4 S 0.087 5.913 5 C -0.239 4.239 6 C 0.145 3.855 7 N -0.672 5.672 8 C 0.699 3.301 9 O -0.577 6.577 10 N -0.731 5.731 11 C 0.138 3.862 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.164 0.836 25 H 0.205 0.795 26 H 0.405 0.595 27 H 0.395 0.605 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 20.524 1.642 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.345 4.345 4 S 0.349 5.651 5 C -0.378 4.378 6 C 0.039 3.961 7 N -0.319 5.319 8 C 0.399 3.601 9 O -0.456 6.456 10 N -0.384 5.384 11 C 0.016 3.984 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.182 0.818 25 H 0.221 0.779 26 H 0.240 0.760 27 H 0.229 0.771 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.469 21.194 1.602 21.260 hybrid contribution -1.798 -1.777 -0.064 2.529 sum -1.329 19.417 1.538 19.523 Atomic orbital electron populations 1.20482 0.89638 1.02729 1.02472 1.18543 0.97278 0.90964 1.06521 1.25167 0.96506 1.01634 1.11222 1.84207 1.05545 1.01289 1.74070 1.26456 0.99754 0.98713 1.12869 1.16401 0.91365 0.84058 1.04297 1.42566 1.10226 1.02893 1.76263 1.16013 0.85306 0.80462 0.78288 1.90672 1.12312 1.84550 1.58088 1.45560 1.10604 1.05279 1.76932 1.21687 0.93743 0.82249 1.00718 1.19329 0.95132 0.90156 0.97835 1.20999 0.93204 0.90962 1.50967 0.92219 1.24991 0.95040 0.99242 0.94967 1.69939 1.09007 1.24347 1.50034 0.86556 0.80175 0.81860 0.78859 1.20076 1.21243 1.20081 0.90985 0.91801 0.91124 0.81810 0.77881 0.76000 0.77103 0.92463 0.92466 0.95904 0.95895 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.85 36.01 0.35 -0.37 16 2 C -0.12 -1.29 5.81 -106.12 -0.62 -1.91 16 3 C -0.21 -2.11 10.97 29.04 0.32 -1.79 16 4 S 0.09 1.00 23.33 -107.50 -2.51 -1.51 16 5 C -0.24 -3.55 10.04 29.17 0.29 -3.26 16 6 C 0.14 2.00 6.55 -85.09 -0.56 1.44 16 7 N -0.67 -9.12 5.42 -15.19 -0.08 -9.20 16 8 C 0.70 12.09 8.52 -86.92 -0.74 11.35 16 9 O -0.58 -11.83 13.12 5.27 0.07 -11.76 16 10 N -0.73 -12.51 5.56 -65.22 -0.36 -12.88 16 11 C 0.14 2.89 5.61 -4.04 -0.02 2.87 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.45 6.93 -51.93 -0.36 0.09 16 23 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 24 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.20 3.54 5.28 -52.53 -0.28 3.26 16 26 H 0.40 4.14 7.30 -40.82 -0.30 3.84 16 27 H 0.40 5.72 8.49 -40.82 -0.35 5.37 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 289.54 15.07 4.36 4.36 Total: -1.00 -31.29 289.54 -8.11 -39.40 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.78 Total: 5.12 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.52 Total: -4.59 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.29 Total: -47.23 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.29 -8.11 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273182043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.497 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds