Wall clock time and date at job start Sun Mar 29 2020 23:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 C 1.50710 * 109.46745 * 179.97438 * 8 7 6 10 10 O 1.21291 * 120.00105 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99848 * 180.02562 * 9 8 7 12 12 C 1.37094 * 120.00107 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99941 * 359.97438 * 12 11 9 14 14 C 1.38952 * 120.00113 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99784 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99948 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47112 * 90.00439 * 16 14 12 18 18 H 1.48503 * 109.47046 * 210.00513 * 16 14 12 19 19 H 1.48498 * 109.47055 * 330.00672 * 16 14 12 20 20 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 21 21 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 24 24 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 25 25 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 26 26 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 27 27 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 28 28 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 29 29 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 30 30 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 31 31 H 0.97000 * 119.99686 * 359.97438 * 11 9 8 32 32 H 0.97000 * 119.99657 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 6 6.1327 -4.0446 -2.8891 10 8 5.6191 -3.4412 -3.8074 11 7 6.9936 -5.0504 -3.1415 12 6 7.2892 -5.3912 -4.4361 13 1 6.8318 -4.8539 -5.2537 14 6 8.1763 -6.4285 -4.6962 15 7 8.4592 -6.7554 -5.9372 16 14 8.9668 -7.3582 -3.2820 17 1 8.1120 -8.5142 -2.9103 18 1 10.3062 -7.8465 -3.6978 19 1 9.1107 -6.4531 -2.1135 20 7 2.2199 -1.1083 -0.0064 21 1 -0.3633 -0.0052 1.0277 22 1 -0.3633 -0.8874 -0.5184 23 1 -0.3633 0.8926 -0.5093 24 1 1.8392 2.1308 0.0005 25 1 5.3966 -1.8274 0.5002 26 1 4.0439 -2.9843 0.4958 27 1 3.9003 -2.8071 -1.9733 28 1 5.2530 -1.6502 -1.9690 29 1 6.7213 -3.3696 -0.9517 30 1 5.3690 -4.5269 -0.9559 31 1 7.4046 -5.5327 -2.4070 32 1 9.0788 -7.4793 -6.1188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282933807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:25 Heat of formation + Delta-G solvation = -35.075913 kcal Electronic energy + Delta-G solvation = -15558.585350 eV Core-core repulsion = 12837.392149 eV Total energy + Delta-G solvation = -2721.193201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85250 -40.29005 -36.39729 -35.72513 -33.76705 -32.76978 -29.77245 -28.45120 -26.88928 -24.41546 -22.40733 -21.20739 -20.65785 -20.14248 -18.58190 -17.63401 -16.83563 -16.63578 -16.21950 -15.84797 -15.37358 -15.08599 -14.68914 -14.33267 -14.29087 -14.11196 -13.58566 -13.34883 -13.04403 -12.72437 -12.68194 -12.45197 -12.34778 -12.22305 -11.96378 -11.67055 -11.51887 -10.61887 -10.44868 -10.34762 -10.25354 -9.60503 -8.41853 -6.03283 -0.24760 0.45495 0.81657 1.31380 1.37155 1.46236 1.80186 1.97061 2.23971 2.91637 3.15319 3.19302 3.86173 4.05790 4.09745 4.24485 4.30115 4.39239 4.58133 4.66362 4.76279 4.78147 4.81336 4.87976 5.00317 5.21179 5.34526 5.40092 5.55561 5.94939 6.58188 6.82298 6.87502 7.39712 7.97289 8.76101 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.047168 B = 0.003598 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.483789 B = 7780.722743 C = 7882.911793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.041 3.959 3 C -0.267 4.267 4 S 0.135 5.865 5 C 0.043 3.957 6 C -0.038 4.038 7 C -0.085 4.085 8 C -0.118 4.118 9 C 0.444 3.556 10 O -0.633 6.633 11 N -0.590 5.590 12 C -0.334 4.334 13 H 0.052 0.948 14 C -0.017 4.017 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.227 1.227 20 N -0.505 5.505 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.203 0.797 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.392 0.608 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 12.402 20.783 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.406 4.406 4 S 0.390 5.610 5 C -0.234 4.234 6 C -0.079 4.079 7 C -0.125 4.125 8 C -0.158 4.158 9 C 0.233 3.767 10 O -0.519 6.519 11 N -0.231 5.231 12 C -0.463 4.463 13 H 0.070 0.930 14 C -0.215 4.215 15 N -0.576 5.576 16 Si 0.787 3.213 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.150 1.150 20 N -0.221 5.221 21 H 0.105 0.895 22 H 0.084 0.916 23 H 0.112 0.888 24 H 0.220 0.780 25 H 0.135 0.865 26 H 0.124 0.876 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.228 0.772 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.955 12.716 20.037 25.029 hybrid contribution -0.433 -0.685 -0.380 0.895 sum -8.388 12.031 19.657 24.525 Atomic orbital electron populations 1.20433 0.85492 1.03859 1.03752 1.20829 0.99694 0.86602 1.01925 1.27159 0.94893 1.04863 1.13691 1.83882 1.07664 1.02096 1.67352 1.27347 0.94120 0.99610 1.02362 1.20386 0.96347 0.93976 0.97165 1.21113 0.98395 0.97642 0.95304 1.21551 1.02252 1.00638 0.91397 1.21293 0.81151 0.81348 0.92896 1.90542 1.56100 1.55975 1.49313 1.42087 1.41754 1.32439 1.06794 1.19042 1.26130 1.17068 0.84069 0.93016 1.26184 0.97176 0.97645 1.00489 1.69815 1.35887 1.30603 1.21342 0.85331 0.78307 0.79346 0.78331 1.18152 1.20019 1.14980 1.66160 1.05469 1.33068 1.17442 0.89466 0.91625 0.88769 0.78026 0.86460 0.87558 0.93872 0.92782 0.85978 0.86605 0.77195 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.31 71.24 0.73 -0.49 16 2 C 0.04 0.93 6.74 41.52 0.28 1.21 16 3 C -0.27 -5.04 11.13 66.78 0.74 -4.30 16 4 S 0.13 2.70 23.18 -56.49 -1.31 1.39 16 5 C 0.04 1.05 6.64 88.52 0.59 1.64 16 6 C -0.04 -0.80 5.80 29.85 0.17 -0.62 16 7 C -0.08 -2.46 4.49 30.59 0.14 -2.33 16 8 C -0.12 -3.38 5.70 29.85 0.17 -3.21 16 9 C 0.44 20.19 7.78 87.66 0.68 20.88 16 10 O -0.63 -36.05 15.56 -3.06 -0.05 -36.10 16 11 N -0.59 -28.01 5.09 -306.98 -1.56 -29.57 16 12 C -0.33 -19.88 10.16 84.04 0.85 -19.02 16 13 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 14 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 15 N -0.94 -57.05 13.96 21.66 0.30 -56.75 16 16 Si 0.97 38.69 27.74 68.60 1.90 40.59 16 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 20 N -0.51 -13.89 10.53 -179.40 -1.89 -15.78 16 21 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.07 8.12 -2.38 -0.02 1.05 16 24 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.52 8.10 -2.39 -0.02 1.50 16 28 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 32 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -81.02 293.72 2.76 -78.26 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.54 Total: 24.66 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.83 Total: -6.71 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.15 Total: -102.09 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.05 Total: -36.10 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -81.02 2.76 -78.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282933807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.180 kcal (2) G-P(sol) polarization free energy of solvation -81.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds