Wall clock time and date at job start Sun Mar 29 2020 23:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47119 * 2 1 4 4 C 1.50696 * 109.47248 * 120.00309 * 2 1 3 5 5 H 1.08001 * 120.00140 * 119.99833 * 4 2 1 6 6 C 1.37881 * 119.99527 * 299.99684 * 4 2 1 7 7 N 1.31519 * 119.99517 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00457 * 0.02562 * 6 4 2 9 9 H 1.48488 * 109.47314 * 89.99450 * 8 6 4 10 10 H 1.48502 * 109.47228 * 210.00199 * 8 6 4 11 11 H 1.48510 * 109.46802 * 329.99559 * 8 6 4 12 12 N 1.46500 * 109.46961 * 239.99936 * 2 1 3 13 13 C 1.34783 * 120.00066 * 85.00209 * 12 2 1 14 14 O 1.21577 * 119.99820 * 359.97438 * 13 12 2 15 15 C 1.47706 * 120.00026 * 180.02562 * 13 12 2 16 16 C 1.41505 * 126.51621 * 179.97438 * 15 13 12 17 17 C 1.35363 * 105.50137 * 179.97438 * 16 15 13 18 18 N 1.48029 * 126.38325 * 179.97438 * 17 16 15 19 19 O 1.21796 * 119.99669 * 179.97438 * 18 17 16 20 20 O 1.21800 * 119.99880 * 359.97438 * 18 17 16 21 21 N 1.35027 * 107.22988 * 359.97438 * 17 16 15 22 22 H 0.97002 * 124.88798 * 180.02562 * 21 17 16 23 23 N 1.28462 * 110.23411 * 0.02562 * 21 17 16 24 24 H 1.09002 * 109.46741 * 300.00003 * 1 2 3 25 25 H 1.09001 * 109.47189 * 59.99888 * 1 2 3 26 26 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99781 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00418 * 265.00159 * 12 2 1 29 29 H 1.08000 * 127.24627 * 359.71282 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8026 0.8727 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8575 1.1613 -2.4119 15 6 2.6388 -0.7147 -3.5634 16 6 2.8255 -0.1472 -4.8461 17 6 3.2868 -1.1546 -5.6238 18 7 3.6360 -1.0662 -7.0595 19 8 4.0432 -2.0512 -7.6489 20 8 3.5162 -0.0084 -7.6514 21 7 3.3689 -2.2550 -4.8457 22 1 3.6718 -3.1260 -5.1467 23 7 2.9881 -1.9828 -3.6494 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9041 -0.5274 4.4375 28 1 2.2490 -1.6318 -1.1527 29 1 2.6356 0.8736 -5.1432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285305012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:20 Heat of formation + Delta-G solvation = 47.851638 kcal Electronic energy + Delta-G solvation = -18008.628572 eV Core-core repulsion = 14744.738165 eV Total energy + Delta-G solvation = -3263.890407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.77665 -42.24230 -39.09655 -37.09432 -35.23865 -32.94058 -32.46710 -32.15426 -29.94858 -26.97060 -25.35035 -24.60870 -22.43864 -21.32351 -20.64195 -19.75592 -19.05180 -18.23047 -17.82691 -16.80333 -16.29578 -16.05653 -15.44003 -14.64766 -14.51903 -14.23528 -13.29430 -13.03556 -12.30174 -12.22149 -12.08949 -11.91208 -11.64514 -11.61073 -11.43164 -10.90450 -10.41067 -10.27722 -10.14162 -10.00777 -9.57361 -9.34079 -8.85360 -8.37498 -6.27726 -4.31573 -0.44314 0.41576 1.09342 1.47377 2.11867 3.18342 3.30976 3.33417 3.39029 3.40921 3.77772 4.20376 4.25062 4.63372 5.06540 5.11938 5.36183 5.63887 6.04782 6.20633 6.26006 6.43611 6.71982 6.79552 7.03451 7.09592 7.16480 7.37330 7.96884 8.35513 8.54108 8.72293 9.31348 10.84202 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.053581 B = 0.004366 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.449418 B = 6410.972427 C = 6750.853858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 H 0.054 0.946 4 C -0.539 4.539 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.678 5.678 13 C 0.587 3.413 14 O -0.534 6.534 15 C 0.007 3.993 16 C -0.067 4.067 17 C 0.042 3.958 18 N 0.059 4.941 19 O -0.159 6.159 20 O -0.119 6.119 21 N -0.345 5.345 22 H 0.461 0.539 23 N -0.179 5.179 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.268 0.732 28 H 0.403 0.597 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -2.548 -16.438 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.185 1.185 12 N -0.325 5.325 13 C 0.368 3.632 14 O -0.410 6.410 15 C -0.152 4.152 16 C -0.098 4.098 17 C -0.165 4.165 18 N 0.581 4.419 19 O -0.372 6.372 20 O -0.338 6.338 21 N -0.068 5.068 22 H 0.309 0.691 23 N -0.021 5.021 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.238 0.762 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.879 -2.686 -14.940 15.205 hybrid contribution -0.224 0.332 -0.749 0.850 sum 0.654 -2.353 -15.689 15.878 Atomic orbital electron populations 1.22473 0.98869 1.01172 0.99629 1.19251 0.90437 0.94794 0.82200 0.92856 1.20991 1.33634 1.14649 0.88363 0.90022 1.24828 0.95449 0.96737 0.95454 1.69865 1.44623 1.40015 0.98097 0.86879 0.80540 0.83499 0.77627 1.20207 1.22028 1.18544 1.46138 1.63068 1.14300 1.09000 1.16690 0.79113 0.85976 0.81386 1.90815 1.51498 1.14546 1.84135 1.22555 1.06337 0.89743 0.96593 1.21755 0.97074 1.00542 0.90405 1.21887 1.18055 0.92556 0.83957 1.42356 0.98391 1.00924 1.00266 1.94600 1.47567 1.27667 1.67322 1.94641 1.56343 1.17398 1.65435 1.43344 1.47091 1.11507 1.04867 0.69081 1.73993 1.11588 1.17545 0.99014 0.93123 0.94317 0.92586 0.92162 0.76215 0.78806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.96 37.16 0.33 -3.13 15 2 C 0.24 5.36 2.15 -69.08 -0.15 5.22 15 3 H 0.05 1.32 6.63 -51.93 -0.34 0.97 15 4 C -0.54 -14.06 9.31 -34.44 -0.32 -14.38 15 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 15 6 C 0.08 2.16 5.45 -17.82 -0.10 2.07 15 7 N -0.89 -25.69 13.96 55.43 0.77 -24.92 15 8 Si 0.89 20.97 24.37 -169.99 -4.14 16.82 15 9 H -0.28 -6.31 6.87 56.52 0.39 -5.92 15 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 11 H -0.26 -6.07 6.53 56.52 0.37 -5.71 15 12 N -0.68 -12.91 5.07 -55.92 -0.28 -13.19 15 13 C 0.59 10.51 7.79 -12.39 -0.10 10.42 15 14 O -0.53 -11.04 16.59 5.30 0.09 -10.96 15 15 C 0.01 0.10 7.13 -82.77 -0.59 -0.49 15 16 C -0.07 -0.80 10.51 -39.36 -0.41 -1.21 15 17 C 0.04 0.45 8.15 -144.52 -1.18 -0.73 15 18 N 0.06 0.66 4.45 32.90 0.15 0.80 15 19 O -0.16 -1.78 19.25 -29.46 -0.57 -2.34 15 20 O -0.12 -1.42 19.04 -29.46 -0.56 -1.98 15 21 N -0.34 -3.23 6.82 32.85 0.22 -3.01 15 22 H 0.46 2.69 8.96 -190.44 -1.71 0.98 15 23 N -0.18 -2.16 11.92 33.42 0.40 -1.76 15 24 H 0.05 1.11 3.27 -51.93 -0.17 0.94 15 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 28 H 0.40 6.98 8.26 -40.82 -0.34 6.64 15 29 H 0.19 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -30.13 269.19 -5.80 -35.93 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.43 Total: 2.78 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.51 Total: -2.25 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 1.26 Total: -42.07 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.04 Total: -15.28 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.13 -5.80 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285305012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.785 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds