Wall clock time and date at job start Sun Mar 29 2020 23:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47119 * 2 1 4 4 C 1.50696 * 109.47248 * 120.00309 * 2 1 3 5 5 H 1.08001 * 120.00140 * 119.99833 * 4 2 1 6 6 C 1.37881 * 119.99527 * 299.99684 * 4 2 1 7 7 N 1.31519 * 119.99517 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00457 * 0.02562 * 6 4 2 9 9 H 1.48488 * 109.47314 * 89.99450 * 8 6 4 10 10 H 1.48502 * 109.47228 * 210.00199 * 8 6 4 11 11 H 1.48510 * 109.46802 * 329.99559 * 8 6 4 12 12 N 1.46500 * 109.46961 * 239.99936 * 2 1 3 13 13 C 1.34783 * 120.00066 * 85.00209 * 12 2 1 14 14 O 1.21577 * 119.99820 * 359.97438 * 13 12 2 15 15 C 1.47706 * 120.00026 * 180.02562 * 13 12 2 16 16 C 1.41505 * 126.51621 * 179.97438 * 15 13 12 17 17 C 1.35363 * 105.50137 * 179.97438 * 16 15 13 18 18 N 1.48029 * 126.38325 * 179.97438 * 17 16 15 19 19 O 1.21796 * 119.99669 * 179.97438 * 18 17 16 20 20 O 1.21800 * 119.99880 * 359.97438 * 18 17 16 21 21 N 1.35027 * 107.22988 * 359.97438 * 17 16 15 22 22 H 0.97002 * 124.88798 * 180.02562 * 21 17 16 23 23 N 1.28462 * 110.23411 * 0.02562 * 21 17 16 24 24 H 1.09002 * 109.46741 * 300.00003 * 1 2 3 25 25 H 1.09001 * 109.47189 * 59.99888 * 1 2 3 26 26 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99781 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00418 * 265.00159 * 12 2 1 29 29 H 1.08000 * 127.24627 * 359.71282 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8026 0.8727 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8575 1.1613 -2.4119 15 6 2.6388 -0.7147 -3.5634 16 6 2.8255 -0.1472 -4.8461 17 6 3.2868 -1.1546 -5.6238 18 7 3.6360 -1.0662 -7.0595 19 8 4.0432 -2.0512 -7.6489 20 8 3.5162 -0.0084 -7.6514 21 7 3.3689 -2.2550 -4.8457 22 1 3.6718 -3.1260 -5.1467 23 7 2.9881 -1.9828 -3.6494 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9041 -0.5274 4.4375 28 1 2.2490 -1.6318 -1.1527 29 1 2.6356 0.8736 -5.1432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285305012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:20 Heat of formation + Delta-G solvation = 25.973024 kcal Electronic energy + Delta-G solvation = -18009.577300 eV Core-core repulsion = 14744.738165 eV Total energy + Delta-G solvation = -3264.839135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.73042 -43.14850 -40.59640 -37.99415 -36.95427 -34.54529 -33.72123 -33.27064 -31.60653 -27.89751 -27.24363 -25.94670 -23.37101 -22.76860 -21.78835 -21.19511 -19.94665 -19.24133 -19.11744 -18.25607 -17.70506 -17.27501 -16.95588 -16.27157 -15.76825 -15.43457 -14.99073 -14.85863 -14.12437 -13.73048 -13.27480 -13.13591 -12.97862 -12.77307 -12.54828 -12.54625 -12.14026 -11.68485 -11.37108 -11.30592 -11.26280 -11.12776 -10.87196 -10.02250 -8.37375 -6.44510 -1.35356 -0.49965 0.01792 0.51431 1.26641 1.30767 1.39037 1.47875 2.04771 2.12534 2.27680 2.69684 2.98871 3.22130 3.56271 3.94486 4.42739 4.46807 4.56204 4.68005 4.72810 4.97926 5.20174 5.30134 5.38444 5.51775 5.88126 6.10117 6.23315 6.55484 6.69293 7.07010 7.25464 8.77693 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.053581 B = 0.004366 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.449418 B = 6410.972427 C = 6750.853858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.241 3.759 3 H 0.034 0.966 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.256 1.256 12 N -0.681 5.681 13 C 0.593 3.407 14 O -0.564 6.564 15 C -0.014 4.014 16 C -0.064 4.064 17 C 0.049 3.951 18 N 0.061 4.939 19 O -0.144 6.144 20 O -0.136 6.136 21 N -0.317 5.317 22 H 0.478 0.522 23 N -0.173 5.173 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.271 0.729 28 H 0.411 0.589 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -2.739 -18.149 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.052 0.948 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.180 1.180 12 N -0.329 5.329 13 C 0.377 3.623 14 O -0.442 6.442 15 C -0.171 4.171 16 C -0.094 4.094 17 C -0.158 4.158 18 N 0.583 4.417 19 O -0.361 6.361 20 O -0.351 6.351 21 N -0.044 5.044 22 H 0.330 0.670 23 N -0.017 5.017 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.247 0.753 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.436 -2.861 -16.689 16.938 hybrid contribution 0.025 0.243 -0.323 0.405 sum 0.461 -2.618 -17.012 17.219 Atomic orbital electron populations 1.22376 0.97299 1.01983 0.99984 1.18920 0.91578 0.93504 0.82304 0.94776 1.21213 1.32613 1.13723 0.89871 0.92584 1.25580 0.96831 0.99471 0.95243 1.69981 1.46555 1.41943 0.98711 0.85999 0.79699 0.80216 0.77485 1.18477 1.22141 1.17996 1.45930 1.63727 1.14614 1.08644 1.16933 0.78012 0.85599 0.81804 1.90791 1.52632 1.15922 1.84829 1.21817 1.08888 0.90611 0.95798 1.21828 0.96650 1.01379 0.89566 1.21716 1.17714 0.92508 0.83815 1.42347 0.98303 1.00872 1.00213 1.94599 1.46689 1.27495 1.67268 1.94664 1.57277 1.17587 1.65568 1.43397 1.45121 1.12043 1.03821 0.66960 1.73950 1.11125 1.16654 0.99949 0.93726 0.92886 0.91595 0.92017 0.75303 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.47 8.96 71.98 0.65 -5.82 15 2 C 0.24 10.86 2.15 44.24 0.10 10.95 15 3 H 0.03 1.68 6.63 -2.39 -0.02 1.67 15 4 C -0.54 -28.27 9.31 25.60 0.24 -28.03 15 5 H 0.06 3.17 7.98 -2.91 -0.02 3.15 15 6 C 0.03 1.57 5.45 84.65 0.46 2.03 15 7 N -0.93 -54.77 13.96 21.45 0.30 -54.47 15 8 Si 0.94 42.90 24.37 68.60 1.67 44.57 15 9 H -0.26 -11.10 6.87 99.48 0.68 -10.42 15 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 15 11 H -0.26 -11.38 6.53 99.48 0.65 -10.73 15 12 N -0.68 -25.57 5.07 -449.10 -2.28 -27.84 15 13 C 0.59 20.72 7.79 86.74 0.68 21.39 15 14 O -0.56 -22.96 16.59 -3.96 -0.07 -23.03 15 15 C -0.01 -0.36 7.13 42.46 0.30 -0.06 15 16 C -0.06 -1.40 10.51 22.41 0.24 -1.16 15 17 C 0.05 0.93 8.15 128.04 1.04 1.97 15 18 N 0.06 1.20 4.45 -49.84 -0.22 0.98 15 19 O -0.14 -2.78 19.25 18.89 0.36 -2.42 15 20 O -0.14 -2.99 19.04 18.89 0.36 -2.63 15 21 N -0.32 -5.01 6.82 -49.99 -0.34 -5.35 15 22 H 0.48 3.96 8.96 -219.99 -1.97 1.98 15 23 N -0.17 -3.78 11.92 -48.18 -0.57 -4.35 15 24 H 0.04 1.87 3.27 -2.39 -0.01 1.86 15 25 H 0.05 1.99 8.14 -2.39 -0.02 1.98 15 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.27 14.90 8.31 -92.70 -0.77 14.13 15 28 H 0.41 14.02 8.26 -92.71 -0.77 13.25 15 29 H 0.21 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -63.98 269.19 1.33 -62.64 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -1.58 Total: 10.61 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 3.70 Total: 1.27 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.11 Total: -91.03 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: 0.66 Total: -28.07 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.67 Total: 44.57 kcal Total: -63.98 1.33 -62.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285305012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.616 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds