Wall clock time and date at job start Sun Mar 29 2020 23:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36006 * 117.00149 * 2 1 4 4 C 1.38712 * 119.97653 * 180.02562 * 3 2 1 5 5 C 1.38089 * 120.02496 * 180.02562 * 4 3 2 6 6 C 1.38923 * 119.97278 * 359.97438 * 5 4 3 7 7 S 1.76198 * 120.02305 * 180.02562 * 6 5 4 8 8 C 1.81400 * 102.99933 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47118 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47164 * 59.99857 * 9 8 7 11 11 O 1.42903 * 109.47171 * 299.99591 * 9 8 7 12 12 C 1.50707 * 109.47316 * 180.02562 * 9 8 7 13 13 H 1.07995 * 119.99310 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99931 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00169 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99871 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46985 * 89.99971 * 16 14 12 18 18 H 1.48502 * 109.47121 * 210.00067 * 16 14 12 19 19 H 1.48504 * 109.47079 * 330.00105 * 16 14 12 20 20 C 1.38917 * 119.95400 * 0.26658 * 6 5 4 21 21 C 1.38102 * 119.97246 * 359.49817 * 20 6 5 22 22 H 1.08997 * 109.47220 * 60.00004 * 1 2 3 23 23 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47037 * 299.99651 * 1 2 3 25 25 H 1.07994 * 119.98720 * 0.02562 * 4 3 2 26 26 H 1.08003 * 120.01489 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47220 * 59.99744 * 8 7 6 28 28 H 1.08997 * 109.47250 * 299.99931 * 8 7 6 29 29 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 30 30 H 0.96998 * 119.99752 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.01738 * 179.70282 * 20 6 5 32 32 H 1.08001 * 119.98576 * 180.20600 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3035 3.6790 0.0005 7 16 4.1034 5.2490 0.0005 8 6 2.7138 6.4150 0.0005 9 6 3.2503 7.8478 0.0012 10 1 3.8592 8.0082 -0.8886 11 8 4.0478 8.0573 1.1683 12 6 2.0958 8.8166 0.0018 13 1 1.0811 8.4471 0.0013 14 6 2.3353 10.1743 0.0030 15 7 3.5711 10.6241 0.0041 16 14 0.9043 11.3751 0.0031 17 1 0.5243 11.6922 1.4032 18 1 1.3049 12.6227 -0.6958 19 1 -0.2539 10.7650 -0.6981 20 6 1.9163 3.6058 0.0061 21 6 1.2904 2.3748 0.0007 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0193 0.3777 -0.0014 26 1 5.1383 2.5695 0.0000 27 1 2.1052 6.2549 0.8905 28 1 2.1052 6.2549 -0.8894 29 1 3.5696 7.9313 1.9993 30 1 3.7395 11.5794 0.0045 31 1 1.3275 4.5111 0.0114 32 1 0.2119 2.3176 0.0017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287386108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:13 Heat of formation + Delta-G solvation = -68.452397 kcal Electronic energy + Delta-G solvation = -15757.853254 eV Core-core repulsion = 13002.919989 eV Total energy + Delta-G solvation = -2754.933265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01576 -37.30827 -35.95258 -32.22648 -31.31572 -30.14670 -29.66337 -27.43105 -25.42780 -22.69434 -22.30633 -20.94240 -18.26824 -17.31512 -16.91358 -16.13044 -15.82910 -14.76751 -14.67323 -14.39640 -14.33956 -14.10765 -13.70079 -13.41818 -12.91402 -12.79702 -12.09926 -11.86185 -11.69046 -11.29809 -11.19558 -10.95881 -10.92071 -10.76432 -10.16005 -9.72457 -9.17493 -9.05059 -8.88844 -8.68392 -8.33215 -6.80530 -6.11300 -4.31980 1.34350 1.36968 2.07314 3.06447 3.20746 3.21974 3.29507 3.31603 3.73032 4.31105 4.74548 4.84501 4.97089 4.97416 5.15783 5.25736 5.34716 5.40291 5.61977 5.72448 5.88535 5.98809 6.07462 6.18860 6.32708 6.42243 6.56651 6.67466 7.32160 7.52706 7.70668 7.98916 8.69255 9.26338 9.45311 10.92689 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.035817 B = 0.004388 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.567947 B = 6379.920230 C = 7066.272181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.106 3.894 4 C -0.133 4.133 5 C -0.069 4.069 6 C -0.113 4.113 7 S -0.113 6.113 8 C -0.120 4.120 9 C 0.246 3.754 10 H 0.066 0.934 11 O -0.556 6.556 12 C -0.573 4.573 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.855 5.855 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.098 4.098 21 C -0.186 4.186 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.347 0.653 30 H 0.263 0.737 31 H 0.129 0.871 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -17.203 0.279 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.058 3.942 4 C -0.154 4.154 5 C -0.093 4.093 6 C -0.226 4.226 7 S 0.134 5.866 8 C -0.269 4.269 9 C 0.187 3.813 10 H 0.084 0.916 11 O -0.359 6.359 12 C -0.612 4.612 13 H 0.076 0.924 14 C -0.126 4.126 15 N -0.490 5.490 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.122 4.122 21 C -0.207 4.207 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.191 0.809 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.907 -16.723 -0.190 16.974 hybrid contribution -3.007 0.407 0.340 3.053 sum -5.914 -16.316 0.149 17.355 Atomic orbital electron populations 1.23013 0.78725 1.03620 1.01368 1.86057 1.21115 1.27066 1.89234 1.18944 0.92337 0.83944 0.98927 1.20299 0.91266 0.98127 1.05672 1.20600 0.99660 0.89843 0.99208 1.22046 0.96239 0.98893 1.05406 1.85848 1.15781 0.93849 1.91144 1.24913 0.97657 1.00072 1.04224 1.19179 0.91218 0.83897 0.87035 0.91595 1.86607 1.40859 1.93191 1.15197 1.21504 0.92582 0.91264 1.55894 0.92375 1.25031 0.95605 0.98363 0.93576 1.70077 1.18699 1.14055 1.46136 0.86590 0.82451 0.80551 0.78309 1.20398 1.20949 1.19776 1.21105 0.93320 0.97830 0.99976 1.21116 0.99764 0.92053 1.07746 0.92742 0.88468 0.92751 0.85078 0.84893 0.90584 0.90050 0.80914 0.92706 0.85313 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.82 10.50 -19.76 -0.21 -4.03 16 3 C 0.11 1.40 6.69 -39.23 -0.26 1.14 16 4 C -0.13 -1.74 9.98 -39.46 -0.39 -2.13 16 5 C -0.07 -0.98 9.79 -39.38 -0.39 -1.37 16 6 C -0.11 -1.82 6.11 -39.08 -0.24 -2.06 16 7 S -0.11 -2.10 21.56 -107.50 -2.32 -4.42 16 8 C -0.12 -2.40 3.97 37.16 0.15 -2.25 16 9 C 0.25 6.08 2.88 -27.88 -0.08 6.00 16 10 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -14.08 12.32 -35.23 -0.43 -14.52 16 12 C -0.57 -15.18 8.76 -34.44 -0.30 -15.49 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 15 N -0.85 -24.76 12.84 55.43 0.71 -24.05 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.10 -1.48 9.36 -39.38 -0.37 -1.85 16 21 C -0.19 -2.46 9.03 -39.46 -0.36 -2.82 16 22 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 23 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.08 1.44 7.73 -51.92 -0.40 1.04 16 28 H 0.08 1.56 7.76 -51.93 -0.40 1.16 16 29 H 0.35 7.79 9.04 45.56 0.41 8.20 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.13 1.93 5.87 -52.49 -0.31 1.62 16 32 H 0.13 1.36 6.29 -52.49 -0.33 1.03 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -30.30 290.29 -7.30 -37.59 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.06 Total: 6.97 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.34 Total: -17.49 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.71 Total: -24.05 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.64 Total: -18.54 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.32 Total: -4.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.30 -7.30 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287386108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.859 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds