Wall clock time and date at job start Sun Mar 29 2020 23:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36006 * 117.00149 * 2 1 4 4 C 1.38712 * 119.97653 * 180.02562 * 3 2 1 5 5 C 1.38089 * 120.02496 * 180.02562 * 4 3 2 6 6 C 1.38923 * 119.97278 * 359.97438 * 5 4 3 7 7 S 1.76198 * 120.02305 * 180.02562 * 6 5 4 8 8 C 1.81400 * 102.99933 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47118 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47164 * 59.99857 * 9 8 7 11 11 O 1.42903 * 109.47171 * 299.99591 * 9 8 7 12 12 C 1.50707 * 109.47316 * 180.02562 * 9 8 7 13 13 H 1.07995 * 119.99310 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99931 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00169 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99871 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46985 * 89.99971 * 16 14 12 18 18 H 1.48502 * 109.47121 * 210.00067 * 16 14 12 19 19 H 1.48504 * 109.47079 * 330.00105 * 16 14 12 20 20 C 1.38917 * 119.95400 * 0.26658 * 6 5 4 21 21 C 1.38102 * 119.97246 * 359.49817 * 20 6 5 22 22 H 1.08997 * 109.47220 * 60.00004 * 1 2 3 23 23 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47037 * 299.99651 * 1 2 3 25 25 H 1.07994 * 119.98720 * 0.02562 * 4 3 2 26 26 H 1.08003 * 120.01489 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47220 * 59.99744 * 8 7 6 28 28 H 1.08997 * 109.47250 * 299.99931 * 8 7 6 29 29 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 30 30 H 0.96998 * 119.99752 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.01738 * 179.70282 * 20 6 5 32 32 H 1.08001 * 119.98576 * 180.20600 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3035 3.6790 0.0005 7 16 4.1034 5.2490 0.0005 8 6 2.7138 6.4150 0.0005 9 6 3.2503 7.8478 0.0012 10 1 3.8592 8.0082 -0.8886 11 8 4.0478 8.0573 1.1683 12 6 2.0958 8.8166 0.0018 13 1 1.0811 8.4471 0.0013 14 6 2.3353 10.1743 0.0030 15 7 3.5711 10.6241 0.0041 16 14 0.9043 11.3751 0.0031 17 1 0.5243 11.6922 1.4032 18 1 1.3049 12.6227 -0.6958 19 1 -0.2539 10.7650 -0.6981 20 6 1.9163 3.6058 0.0061 21 6 1.2904 2.3748 0.0007 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0193 0.3777 -0.0014 26 1 5.1383 2.5695 0.0000 27 1 2.1052 6.2549 0.8905 28 1 2.1052 6.2549 -0.8894 29 1 3.5696 7.9313 1.9993 30 1 3.7395 11.5794 0.0045 31 1 1.3275 4.5111 0.0114 32 1 0.2119 2.3176 0.0017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287386108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:13 Heat of formation + Delta-G solvation = -88.439328 kcal Electronic energy + Delta-G solvation = -15758.719952 eV Core-core repulsion = 13002.919989 eV Total energy + Delta-G solvation = -2755.799963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98918 -38.29965 -37.91451 -34.30184 -32.48295 -31.47360 -31.09659 -28.22491 -27.35178 -23.87033 -23.49092 -22.60588 -19.27754 -19.25463 -18.19265 -17.11576 -16.71802 -16.63717 -16.33831 -16.10877 -15.73091 -15.51070 -14.77814 -14.61686 -14.25646 -14.02152 -13.42742 -13.33906 -13.15675 -12.84552 -12.77972 -12.53284 -12.20057 -12.02060 -11.83798 -11.39678 -10.94162 -10.73539 -10.31602 -10.13367 -9.99305 -8.18155 -8.15253 -6.45422 0.25999 0.28038 0.66087 1.41976 1.42359 1.53320 1.63762 2.37005 2.38531 2.65081 3.09106 3.75441 3.86691 4.06861 4.15673 4.23085 4.28022 4.34169 4.40406 4.46726 4.58594 4.73838 4.83412 4.93938 5.04321 5.26321 5.32254 5.50589 5.63125 5.63487 5.95427 6.39887 6.64353 7.27835 7.46372 8.87218 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.035817 B = 0.004388 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.567947 B = 6379.920230 C = 7066.272181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.110 3.890 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.131 4.131 7 S -0.142 6.142 8 C -0.102 4.102 9 C 0.246 3.754 10 H 0.028 0.972 11 O -0.572 6.572 12 C -0.585 4.585 13 H 0.067 0.933 14 C 0.028 3.972 15 N -0.898 5.898 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.107 4.107 21 C -0.187 4.187 22 H 0.062 0.938 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.155 0.845 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.358 0.642 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 -18.961 0.494 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.063 3.937 4 C -0.155 4.155 5 C -0.094 4.094 6 C -0.244 4.244 7 S 0.103 5.897 8 C -0.250 4.250 9 C 0.187 3.813 10 H 0.046 0.954 11 O -0.376 6.376 12 C -0.624 4.624 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.131 4.131 21 C -0.207 4.207 22 H 0.081 0.919 23 H 0.140 0.860 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.161 0.839 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.203 0.797 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.863 -18.515 0.028 19.143 hybrid contribution -2.438 0.740 0.273 2.563 sum -7.301 -17.775 0.301 19.218 Atomic orbital electron populations 1.23350 0.76583 1.05675 1.02143 1.86064 1.23325 1.26183 1.88761 1.19128 0.92630 0.84550 0.97439 1.20565 0.91732 0.98390 1.04856 1.20771 1.00292 0.89669 0.98636 1.21955 0.96805 0.97461 1.08189 1.85807 1.15788 0.95828 1.92283 1.24455 0.97907 0.97796 1.04884 1.18940 0.90073 0.86708 0.85580 0.95407 1.86548 1.41518 1.93589 1.15915 1.21911 0.93418 0.91995 1.55080 0.91512 1.25929 0.98152 1.00394 0.93092 1.70222 1.21094 1.14388 1.47756 0.85471 0.79159 0.77891 0.78529 1.19688 1.20947 1.18677 1.21182 0.92931 0.98671 1.00317 1.21341 1.01138 0.91224 1.06987 0.91939 0.85960 0.91925 0.82770 0.83870 0.89580 0.89599 0.79691 0.92760 0.85600 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.81 10.50 -93.62 -0.98 -7.79 16 3 C 0.11 2.63 6.69 22.50 0.15 2.78 16 4 C -0.14 -3.21 9.98 22.35 0.22 -2.99 16 5 C -0.07 -1.90 9.79 22.40 0.22 -1.68 16 6 C -0.13 -4.15 6.11 22.60 0.14 -4.02 16 7 S -0.14 -5.35 21.56 -56.49 -1.22 -6.57 16 8 C -0.10 -4.11 3.97 71.98 0.29 -3.83 16 9 C 0.25 12.49 2.88 29.85 0.09 12.57 16 10 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 11 O -0.57 -29.70 12.32 -148.98 -1.84 -31.54 16 12 C -0.58 -31.19 8.76 25.60 0.22 -30.97 16 13 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.03 1.51 5.40 84.65 0.46 1.96 16 15 N -0.90 -53.12 12.84 21.45 0.28 -52.85 16 16 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 C -0.11 -3.10 9.36 22.40 0.21 -2.89 16 21 C -0.19 -4.49 9.03 22.35 0.20 -4.28 16 22 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 23 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 25 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 26 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 27 H 0.09 3.25 7.73 -2.39 -0.02 3.23 16 28 H 0.09 3.32 7.76 -2.39 -0.02 3.30 16 29 H 0.36 16.37 9.04 -74.06 -0.67 15.70 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.13 3.65 5.87 -2.91 -0.02 3.63 16 32 H 0.15 2.78 6.29 -2.91 -0.02 2.76 16 Total: -1.00 -65.12 290.29 2.04 -63.08 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.46 Total: 23.48 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.31 Total: -32.02 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.28 Total: -52.85 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -2.82 Total: -39.33 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.22 Total: -6.57 kcal Total: -65.12 2.04 -63.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287386108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.359 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds