Wall clock time and date at job start Sun Mar 29 2020 23:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20433 * 2 1 4 4 C 1.38427 * 114.92075 * 180.02562 * 3 2 1 5 5 C 1.33389 * 114.92367 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.20480 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47123 * 90.00057 * 6 5 4 8 8 C 1.37332 * 119.99983 * 180.02562 * 7 6 5 9 9 O 1.35093 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.30094 * 120.00309 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00360 * 172.53820 * 10 8 7 12 12 C 1.50702 * 109.46898 * 113.74965 * 11 10 8 13 13 H 1.07997 * 120.00100 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99919 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99574 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47200 * 90.00199 * 16 14 12 18 18 H 1.48501 * 109.47099 * 210.00045 * 16 14 12 19 19 H 1.48506 * 109.47163 * 329.99750 * 16 14 12 20 20 S 1.75884 * 109.59195 * 0.24067 * 5 4 3 21 21 H 1.08997 * 109.46978 * 90.00184 * 1 2 3 22 22 H 1.08998 * 109.47045 * 210.00105 * 1 2 3 23 23 H 1.09001 * 109.46717 * 329.99967 * 1 2 3 24 24 H 1.07996 * 122.53690 * 0.02562 * 3 2 1 25 25 H 1.07997 * 122.53747 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.46919 * 329.99754 * 6 5 4 27 27 H 1.09003 * 109.46595 * 209.99787 * 6 5 4 28 28 H 0.97001 * 120.00139 * 359.97438 * 7 6 5 29 29 H 0.96700 * 114.00213 * 184.98358 * 9 8 7 30 30 H 1.09000 * 109.47261 * 233.74528 * 11 10 8 31 31 H 1.08997 * 109.47056 * 353.74581 * 11 10 8 32 32 H 0.97005 * 119.99630 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3861 -0.9771 -0.0029 7 7 5.8443 -1.1495 1.3779 8 6 7.1089 -1.6234 1.6276 9 8 7.9301 -1.9312 0.6001 10 7 7.5160 -1.7760 2.8538 11 6 8.7976 -2.4323 3.1238 12 6 9.7564 -1.4352 3.7219 13 1 9.4426 -0.4146 3.8841 14 6 11.0346 -1.8256 4.0609 15 7 11.4172 -3.0681 3.8618 16 14 12.2232 -0.5895 4.8015 17 1 12.0937 -0.6032 6.2807 18 1 13.6129 -0.9510 4.4229 19 1 11.9081 0.7684 4.2895 20 16 2.5210 -1.4372 -0.0088 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8669 2.0894 0.0004 25 1 4.3721 1.6350 -0.0002 26 1 6.0385 -0.2712 -0.5168 27 1 5.4132 -1.9378 -0.5173 28 1 5.2548 -0.9282 2.1157 29 1 8.7691 -2.3276 0.8722 30 1 8.6448 -3.2540 3.8235 31 1 9.2106 -2.8201 2.1926 32 1 12.3165 -3.3426 4.1000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331138237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:51 Heat of formation + Delta-G solvation = 15.245204 kcal Electronic energy + Delta-G solvation = -15515.748823 eV Core-core repulsion = 12796.737710 eV Total energy + Delta-G solvation = -2719.011114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.82054 -38.12206 -35.15691 -33.47277 -32.37241 -31.48395 -28.60753 -26.56610 -24.38075 -22.95425 -22.40947 -20.50808 -18.96530 -17.12080 -16.89022 -16.39248 -15.93907 -15.47986 -14.66487 -14.51008 -14.42217 -14.12155 -13.41268 -13.25559 -12.84858 -12.54247 -12.29121 -12.06061 -12.00267 -11.66683 -11.61372 -10.88982 -10.85791 -10.77104 -10.08372 -9.84265 -9.29796 -8.72633 -8.61085 -8.60353 -8.11333 -7.17734 -6.03879 -4.08621 0.74338 1.42324 1.83769 2.51663 3.31590 3.36947 3.41193 3.48777 3.67391 4.44279 4.53851 4.64373 4.93268 4.98473 5.17749 5.21004 5.28559 5.38680 5.56129 5.61394 5.68370 6.00950 6.09717 6.35367 6.42338 6.94799 7.35865 7.51182 7.73637 7.90835 8.17672 8.33376 8.96639 9.44368 9.65178 11.03636 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049753 B = 0.003536 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.643921 B = 7915.545499 C = 8120.405204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.144 4.144 4 C -0.113 4.113 5 C -0.196 4.196 6 C 0.209 3.791 7 N -0.708 5.708 8 C 0.533 3.467 9 O -0.547 6.547 10 N -0.631 5.631 11 C 0.202 3.798 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 S 0.114 5.886 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.418 0.582 29 H 0.420 0.580 30 H 0.041 0.959 31 H -0.014 1.014 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 5.428 -10.930 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 C -0.174 4.174 4 C -0.144 4.144 5 C -0.314 4.314 6 C 0.082 3.918 7 N -0.360 5.360 8 C 0.218 3.782 9 O -0.350 6.350 10 N -0.380 5.380 11 C 0.075 3.925 12 C -0.549 4.549 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 S 0.379 5.621 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.156 0.844 25 H 0.160 0.840 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.257 0.743 29 H 0.282 0.718 30 H 0.059 0.941 31 H 0.003 0.997 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.398 4.033 -10.752 23.408 hybrid contribution 1.848 1.767 0.316 2.577 sum -18.550 5.801 -10.436 22.060 Atomic orbital electron populations 1.20339 0.87889 1.03213 1.02682 1.24590 1.00030 0.96110 1.09077 1.20076 0.92856 0.99267 1.05187 1.20188 0.96307 0.96019 1.01919 1.24468 0.98464 0.96623 1.11807 1.19467 0.87360 1.00472 0.84453 1.43335 1.10984 1.74892 1.06791 1.20026 0.84271 0.91019 0.82838 1.84325 1.33429 1.79586 1.37626 1.72352 1.23436 1.27777 1.14398 1.19416 0.83738 0.94575 0.94743 1.21247 0.95845 0.96762 1.41060 0.92054 1.25033 0.98252 0.95504 0.95842 1.69951 1.19180 1.16346 1.48316 0.86444 0.79814 0.81345 0.79527 1.20509 1.21200 1.19878 1.84369 0.96144 1.08934 1.72691 0.90772 0.91266 0.90532 0.84387 0.84010 0.90408 0.91330 0.74286 0.71788 0.94095 0.99679 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.38 36.01 0.37 -0.16 16 2 C -0.18 -1.67 6.51 -36.00 -0.23 -1.90 16 3 C -0.14 -1.36 10.05 -41.21 -0.41 -1.77 16 4 C -0.11 -1.19 10.05 -41.21 -0.41 -1.61 16 5 C -0.20 -2.26 5.88 -36.00 -0.21 -2.47 16 6 C 0.21 2.77 6.24 -5.19 -0.03 2.73 16 7 N -0.71 -11.60 5.65 -63.71 -0.36 -11.96 16 8 C 0.53 11.02 8.77 -88.58 -0.78 10.25 16 9 O -0.55 -10.82 12.90 -16.98 -0.22 -11.04 16 10 N -0.63 -15.40 10.59 -63.71 -0.67 -16.08 16 11 C 0.20 5.52 5.97 -5.19 -0.03 5.48 16 12 C -0.51 -15.00 9.39 -34.44 -0.32 -15.33 16 13 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 20 S 0.11 1.19 23.31 -107.50 -2.51 -1.31 16 21 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.42 6.60 8.58 -40.82 -0.35 6.25 16 29 H 0.42 8.41 5.89 45.56 0.27 8.68 16 30 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 31 H -0.01 -0.37 5.41 -51.93 -0.28 -0.65 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -32.08 296.26 -9.03 -41.11 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.29 Total: 7.04 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.16 Total: -3.28 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.30 Total: -54.03 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.22 Total: -11.04 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.08 -9.03 -41.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331138237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.352 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds