Wall clock time and date at job start Sun Mar 29 2020 23:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20433 * 2 1 4 4 C 1.38427 * 114.92075 * 180.02562 * 3 2 1 5 5 C 1.33389 * 114.92367 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.20480 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47123 * 90.00057 * 6 5 4 8 8 C 1.37332 * 119.99983 * 180.02562 * 7 6 5 9 9 O 1.35093 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.30094 * 120.00309 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00360 * 172.53820 * 10 8 7 12 12 C 1.50702 * 109.46898 * 113.74965 * 11 10 8 13 13 H 1.07997 * 120.00100 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99919 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99574 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47200 * 90.00199 * 16 14 12 18 18 H 1.48501 * 109.47099 * 210.00045 * 16 14 12 19 19 H 1.48506 * 109.47163 * 329.99750 * 16 14 12 20 20 S 1.75884 * 109.59195 * 0.24067 * 5 4 3 21 21 H 1.08997 * 109.46978 * 90.00184 * 1 2 3 22 22 H 1.08998 * 109.47045 * 210.00105 * 1 2 3 23 23 H 1.09001 * 109.46717 * 329.99967 * 1 2 3 24 24 H 1.07996 * 122.53690 * 0.02562 * 3 2 1 25 25 H 1.07997 * 122.53747 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.46919 * 329.99754 * 6 5 4 27 27 H 1.09003 * 109.46595 * 209.99787 * 6 5 4 28 28 H 0.97001 * 120.00139 * 359.97438 * 7 6 5 29 29 H 0.96700 * 114.00213 * 184.98358 * 9 8 7 30 30 H 1.09000 * 109.47261 * 233.74528 * 11 10 8 31 31 H 1.08997 * 109.47056 * 353.74581 * 11 10 8 32 32 H 0.97005 * 119.99630 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3861 -0.9771 -0.0029 7 7 5.8443 -1.1495 1.3779 8 6 7.1089 -1.6234 1.6276 9 8 7.9301 -1.9312 0.6001 10 7 7.5160 -1.7760 2.8538 11 6 8.7976 -2.4323 3.1238 12 6 9.7564 -1.4352 3.7219 13 1 9.4426 -0.4146 3.8841 14 6 11.0346 -1.8256 4.0609 15 7 11.4172 -3.0681 3.8618 16 14 12.2232 -0.5895 4.8015 17 1 12.0937 -0.6032 6.2807 18 1 13.6129 -0.9510 4.4229 19 1 11.9081 0.7684 4.2895 20 16 2.5210 -1.4372 -0.0088 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8669 2.0894 0.0004 25 1 4.3721 1.6350 -0.0002 26 1 6.0385 -0.2712 -0.5168 27 1 5.4132 -1.9378 -0.5173 28 1 5.2548 -0.9282 2.1157 29 1 8.7691 -2.3276 0.8722 30 1 8.6448 -3.2540 3.8235 31 1 9.2106 -2.8201 2.1926 32 1 12.3165 -3.3426 4.1000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331138237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:50 Heat of formation + Delta-G solvation = -9.679034 kcal Electronic energy + Delta-G solvation = -15516.829619 eV Core-core repulsion = 12796.737710 eV Total energy + Delta-G solvation = -2720.091910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39090 -39.04276 -36.44394 -35.52013 -33.91949 -32.75467 -29.90361 -28.25151 -25.51023 -24.44260 -23.53095 -22.20863 -19.79979 -18.60198 -18.50504 -18.07180 -17.49283 -16.65579 -16.44241 -15.95287 -15.61824 -14.83774 -14.61264 -14.39465 -14.18078 -14.01183 -13.67255 -13.48790 -12.99511 -12.88286 -12.79275 -12.70400 -12.40210 -12.15123 -11.80196 -11.63257 -10.98955 -10.74787 -10.04421 -9.50511 -9.41153 -8.92970 -8.20300 -6.37623 -0.07075 0.63125 1.05094 1.38528 1.40485 1.51673 1.65241 1.92874 2.08762 2.40492 3.04944 3.24635 3.68254 3.99293 4.22950 4.41542 4.49426 4.68362 4.75769 4.77122 4.82246 4.89058 5.12707 5.25089 5.28331 5.32702 5.60221 5.67334 5.76656 6.06410 6.19724 6.56360 6.76104 7.29816 7.79638 8.84159 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049753 B = 0.003536 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.643921 B = 7915.545499 C = 8120.405204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.171 4.171 3 C -0.156 4.156 4 C -0.106 4.106 5 C -0.218 4.218 6 C 0.211 3.789 7 N -0.693 5.693 8 C 0.548 3.452 9 O -0.539 6.539 10 N -0.671 5.671 11 C 0.214 3.786 12 C -0.536 4.536 13 H 0.049 0.951 14 C 0.008 3.992 15 N -0.927 5.927 16 Si 0.972 3.028 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.269 1.269 20 S 0.099 5.901 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.161 0.839 25 H 0.150 0.850 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.422 0.578 29 H 0.420 0.580 30 H 0.007 0.993 31 H -0.014 1.014 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 6.990 -11.542 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.289 4.289 3 C -0.185 4.185 4 C -0.138 4.138 5 C -0.336 4.336 6 C 0.086 3.914 7 N -0.345 5.345 8 C 0.234 3.766 9 O -0.340 6.340 10 N -0.422 5.422 11 C 0.086 3.914 12 C -0.574 4.574 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.194 1.194 20 S 0.363 5.637 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.179 0.821 25 H 0.167 0.833 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.281 0.719 30 H 0.025 0.975 31 H 0.003 0.997 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.465 5.602 -11.406 24.945 hybrid contribution 1.997 1.297 0.389 2.413 sum -19.468 6.899 -11.017 23.409 Atomic orbital electron populations 1.20480 0.85798 1.04197 1.03854 1.25010 1.01355 0.95152 1.07347 1.20321 0.92312 1.00459 1.05400 1.20427 0.97270 0.95788 1.00359 1.24242 0.97694 0.97222 1.14410 1.19544 0.88746 1.00842 0.82313 1.43583 1.09116 1.73123 1.08640 1.20308 0.85091 0.88991 0.82217 1.84336 1.33316 1.79263 1.37075 1.72288 1.22589 1.31115 1.16249 1.19050 0.84976 0.93491 0.93864 1.21479 0.97061 0.96633 1.42250 0.93289 1.25909 0.99847 0.97518 0.95857 1.70050 1.19893 1.18034 1.48679 0.85354 0.77599 0.78754 0.78723 1.19805 1.19915 1.19406 1.84415 0.96301 1.09950 1.73028 0.89409 0.90843 0.88972 0.82141 0.83274 0.90008 0.91176 0.73857 0.71873 0.97534 0.99669 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.38 71.24 0.74 -0.11 16 2 C -0.17 -2.77 6.51 24.59 0.16 -2.61 16 3 C -0.16 -2.55 10.05 21.22 0.21 -2.33 16 4 C -0.11 -2.05 10.05 21.22 0.21 -1.84 16 5 C -0.22 -4.75 5.88 24.59 0.14 -4.61 16 6 C 0.21 5.37 6.24 85.63 0.53 5.90 16 7 N -0.69 -22.31 5.65 -465.96 -2.63 -24.94 16 8 C 0.55 22.68 8.77 179.63 1.58 24.26 16 9 O -0.54 -21.20 12.90 -83.69 -1.08 -22.28 16 10 N -0.67 -33.44 10.59 -469.73 -4.97 -38.42 16 11 C 0.21 12.07 5.97 85.63 0.51 12.59 16 12 C -0.54 -32.12 9.39 25.60 0.24 -31.88 16 13 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 16 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 S 0.10 1.94 23.31 -56.49 -1.32 0.62 16 21 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 25 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.42 13.07 8.58 -92.71 -0.80 12.27 16 29 H 0.42 17.03 5.89 -74.06 -0.44 16.60 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H -0.01 -0.76 5.41 -2.39 -0.01 -0.77 16 32 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -68.59 296.26 -2.98 -71.57 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.08 Total: 21.30 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.79 Total: 0.28 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -7.32 Total: -118.70 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.08 Total: -22.28 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.32 Total: 0.62 kcal Total: -68.59 -2.98 -71.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331138237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.893 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds