Wall clock time and date at job start Sun Mar 29 2020 23:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33639 * 122.75096 * 2 1 4 4 S 1.76199 * 107.92822 * 180.02562 * 3 2 1 5 5 C 1.70974 * 90.28043 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91675 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47192 * 270.02280 * 6 5 4 8 8 C 1.50694 * 109.47254 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00093 * 179.72320 * 8 7 6 11 11 C 1.46501 * 119.99956 * 0.02562 * 10 8 7 12 12 C 1.37096 * 120.00252 * 180.02562 * 10 8 7 13 13 H 1.08000 * 119.99718 * 24.41209 * 12 10 8 14 14 C 1.38949 * 119.99924 * 204.41422 * 12 10 8 15 15 N 1.31415 * 120.00362 * 12.62840 * 14 12 10 16 16 Si 1.86795 * 119.99979 * 192.62334 * 14 12 10 17 17 H 1.48501 * 109.47436 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47280 * 120.00129 * 16 14 12 19 19 H 1.48502 * 109.47540 * 240.00171 * 16 14 12 20 20 N 1.29024 * 110.16849 * 0.23920 * 5 4 3 21 21 H 1.08996 * 109.47082 * 89.97717 * 1 2 3 22 22 H 1.08996 * 109.46937 * 209.97272 * 1 2 3 23 23 H 1.09001 * 109.46843 * 329.96902 * 1 2 3 24 24 H 1.08002 * 126.03499 * 0.04603 * 3 2 1 25 25 H 1.09003 * 109.47340 * 150.02135 * 6 5 4 26 26 H 1.09005 * 109.46780 * 30.02026 * 6 5 4 27 27 H 1.09003 * 109.47096 * 59.99706 * 7 6 5 28 28 H 1.09000 * 109.47067 * 300.00315 * 7 6 5 29 29 H 1.09002 * 109.47290 * 85.83621 * 11 10 8 30 30 H 1.08992 * 109.47347 * 205.84543 * 11 10 8 31 31 H 1.09003 * 109.47120 * 325.84182 * 11 10 8 32 32 H 0.96990 * 120.00041 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 6 4.8145 -2.5131 -1.4464 8 6 5.7945 -3.6579 -1.4480 9 8 6.1891 -4.1200 -0.3982 10 7 6.2278 -4.1724 -2.6159 11 6 5.7466 -3.6183 -3.8838 12 6 7.1190 -5.2142 -2.6173 13 1 7.1796 -5.8741 -1.7645 14 6 7.9441 -5.4211 -3.7160 15 7 8.0541 -4.4924 -4.6393 16 14 8.8971 -7.0191 -3.8806 17 1 8.6016 -7.8938 -2.7174 18 1 8.4948 -7.7088 -5.1327 19 1 10.3523 -6.7257 -3.9227 20 7 2.2200 -1.1083 -0.0066 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8897 0.5143 24 1 1.8391 2.1308 0.0007 25 1 4.0436 -2.9822 0.5098 26 1 5.3963 -1.8251 0.5105 27 1 5.2544 -1.6579 -1.9595 28 1 3.9018 -2.8149 -1.9602 29 1 6.3643 -2.7655 -4.1654 30 1 5.8056 -4.3817 -4.6596 31 1 4.7118 -3.2955 -3.7698 32 1 8.6304 -4.6367 -5.4060 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331300078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:50 Heat of formation + Delta-G solvation = 5.361248 kcal Electronic energy + Delta-G solvation = -16064.593664 eV Core-core repulsion = 13345.153950 eV Total energy + Delta-G solvation = -2719.439714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84709 -38.45937 -34.85350 -33.70897 -31.65770 -30.74983 -27.69580 -26.66007 -25.68577 -23.98918 -21.86374 -19.63183 -18.72926 -17.60145 -16.85255 -16.08583 -15.22432 -14.94971 -14.73533 -14.44734 -14.02859 -13.59529 -13.10152 -12.91990 -12.66059 -12.51341 -12.13411 -11.63917 -11.47455 -11.31503 -11.29645 -11.21311 -10.85576 -10.69949 -10.30736 -10.22088 -9.55096 -9.36286 -9.00469 -8.70741 -8.35093 -7.64626 -6.31256 -3.87429 0.74278 1.41996 1.80781 2.80527 3.16238 3.26630 3.33774 3.90981 4.06275 4.19121 4.81828 5.04597 5.12413 5.14483 5.23809 5.45989 5.47715 5.52026 5.59895 5.78032 5.90977 6.07085 6.19397 6.31539 6.43476 6.47030 6.86523 7.20380 7.58270 7.82216 8.16009 8.49885 9.19952 9.43946 9.99631 10.73874 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.046759 B = 0.004218 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.669735 B = 6636.900351 C = 6656.201462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.277 4.277 4 S 0.114 5.886 5 C 0.074 3.926 6 C -0.027 4.027 7 C -0.121 4.121 8 C 0.449 3.551 9 O -0.591 6.591 10 N -0.446 5.446 11 C 0.111 3.889 12 C -0.306 4.306 13 H 0.099 0.901 14 C 0.030 3.970 15 N -0.883 5.883 16 Si 0.925 3.075 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.477 5.477 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.173 0.827 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 11.198 4.166 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.416 4.416 4 S 0.370 5.630 5 C -0.204 4.204 6 C -0.068 4.068 7 C -0.164 4.164 8 C 0.237 3.763 9 O -0.476 6.476 10 N -0.165 5.165 11 C -0.033 4.033 12 C -0.434 4.434 13 H 0.116 0.884 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.752 3.248 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.192 5.192 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.190 0.810 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.974 11.013 4.471 15.516 hybrid contribution -0.396 -0.478 -0.475 0.782 sum -10.370 10.535 3.996 15.313 Atomic orbital electron populations 1.20339 0.87360 1.03128 1.02863 1.20339 0.98207 0.86683 1.01229 1.26736 0.95411 1.03714 1.15768 1.84070 1.07128 1.03702 1.68145 1.27334 0.93986 0.98360 1.00756 1.20053 0.95183 0.93200 0.98394 1.21503 1.00072 0.98974 0.95803 1.19930 0.86108 0.85732 0.84567 1.90514 1.62346 1.63597 1.31130 1.43576 1.38727 1.30194 1.03987 1.21484 0.94335 0.99933 0.87524 1.19706 1.14491 1.04957 1.04222 0.88364 1.25350 0.96807 0.98694 0.96455 1.70001 1.38284 1.32124 1.11817 0.85875 0.79018 0.81579 0.78312 1.19197 1.20688 1.20751 1.66178 1.04625 1.31350 1.17001 0.90706 0.90607 0.90962 0.80981 0.88101 0.88914 0.90211 0.89935 0.92998 0.90716 0.95571 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.31 36.00 0.37 -0.35 16 2 C 0.07 0.87 6.74 -84.23 -0.57 0.30 16 3 C -0.28 -3.15 11.13 29.12 0.32 -2.82 16 4 S 0.11 1.43 23.18 -107.50 -2.49 -1.06 16 5 C 0.07 1.12 6.64 -13.46 -0.09 1.04 16 6 C -0.03 -0.46 5.09 -27.88 -0.14 -0.60 16 7 C -0.12 -2.25 4.29 -27.89 -0.12 -2.37 16 8 C 0.45 10.92 7.63 -10.99 -0.08 10.84 16 9 O -0.59 -16.19 15.69 5.55 0.09 -16.10 16 10 N -0.45 -11.55 3.01 -122.20 -0.37 -11.92 16 11 C 0.11 2.50 8.45 59.85 0.51 3.01 16 12 C -0.31 -8.60 9.24 -14.93 -0.14 -8.74 16 13 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 14 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 15 N -0.88 -23.68 10.83 55.50 0.60 -23.08 16 16 Si 0.93 20.85 29.57 -169.99 -5.03 15.82 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 N -0.48 -7.45 10.53 -8.06 -0.08 -7.53 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 24 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 25 H 0.10 1.80 8.10 -51.93 -0.42 1.38 16 26 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 27 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 28 H 0.08 1.46 7.39 -51.93 -0.38 1.08 16 29 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 30 H 0.07 1.78 6.80 -51.93 -0.35 1.42 16 31 H 0.03 0.49 6.60 -51.93 -0.34 0.15 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -31.54 289.85 -6.91 -38.44 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.96 Total: 0.06 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.03 Total: 1.00 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.15 Total: -42.53 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.54 -6.91 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331300078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.806 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds