Wall clock time and date at job start Sun Mar 29 2020 23:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46997 * 23.85616 * 3 2 1 5 5 C 1.37106 * 120.00128 * 96.51108 * 4 3 2 6 6 H 1.07993 * 120.00236 * 158.50723 * 5 4 3 7 7 C 1.38948 * 119.99323 * 338.50733 * 5 4 3 8 8 N 1.31404 * 120.00360 * 350.90278 * 7 5 4 9 9 Si 1.86810 * 119.99577 * 170.90149 * 7 5 4 10 10 H 1.48501 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47180 * 119.99978 * 9 7 5 12 12 H 1.48493 * 109.47059 * 240.00054 * 9 7 5 13 13 C 1.34782 * 120.00464 * 276.50971 * 4 3 2 14 14 O 1.21289 * 120.00393 * 186.77537 * 13 4 3 15 15 C 1.50699 * 119.99416 * 6.50083 * 13 4 3 16 16 H 1.09005 * 109.57534 * 25.33418 * 15 13 4 17 17 C 1.53102 * 109.57576 * 145.72031 * 15 13 4 18 18 C 1.52576 * 109.95836 * 182.83335 * 17 15 13 19 19 C 1.52589 * 110.72205 * 289.32523 * 18 17 15 20 20 C 1.53095 * 109.95477 * 70.67830 * 19 18 17 21 21 S 1.81740 * 108.83934 * 296.97025 * 20 19 18 22 22 H 1.08996 * 109.47081 * 263.86016 * 3 2 1 23 23 H 1.08999 * 109.47175 * 143.85266 * 3 2 1 24 24 H 0.97005 * 119.99703 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.38852 * 302.98473 * 17 15 13 26 26 H 1.09004 * 109.38688 * 62.67910 * 17 15 13 27 27 H 1.09002 * 109.22777 * 169.00669 * 18 17 15 28 28 H 1.09000 * 109.19470 * 49.62317 * 18 17 15 29 29 H 1.08996 * 109.39041 * 310.52584 * 19 18 17 30 30 H 1.09004 * 109.38506 * 190.82388 * 19 18 17 31 31 H 1.09000 * 109.57238 * 177.16667 * 20 19 18 32 32 H 1.08996 * 109.68694 * 56.84611 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2623 -0.5586 5 6 3.4523 -1.3351 -1.8808 6 1 4.1183 -2.1152 -2.2188 7 6 2.9556 -0.4052 -2.7858 8 7 2.0113 0.4309 -2.4173 9 14 3.6305 -0.3435 -4.5267 10 1 4.6788 -1.3829 -4.6882 11 1 2.5314 -0.5953 -5.4929 12 1 4.2175 0.9963 -4.7828 13 6 3.1973 -2.3528 0.2271 14 8 3.7155 -3.3627 -0.2002 15 6 2.6710 -2.3153 1.6388 16 1 1.8846 -1.5643 1.7155 17 6 2.1100 -3.6895 2.0138 18 6 1.5113 -3.6425 3.4164 19 6 2.6093 -3.5144 4.4682 20 6 3.2335 -2.1179 4.4045 21 16 4.0221 -1.9011 2.7816 22 1 2.9713 0.1107 1.0217 23 1 2.9710 0.8306 -0.6062 24 1 1.6643 1.0798 -3.0493 25 1 1.3368 -3.9719 1.2995 26 1 2.9120 -4.4273 1.9871 27 1 0.9467 -4.5573 3.5965 28 1 0.8408 -2.7864 3.4913 29 1 3.3786 -4.2636 4.2813 30 1 2.1825 -3.6753 5.4582 31 1 3.9816 -2.0162 5.1906 32 1 2.4587 -1.3630 4.5379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335985546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:58 Heat of formation + Delta-G solvation = -7.224841 kcal Electronic energy + Delta-G solvation = -17030.838139 eV Core-core repulsion = 14310.852651 eV Total energy + Delta-G solvation = -2719.985488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05702 -36.52689 -35.75476 -34.37797 -32.05469 -31.16823 -27.81444 -27.23702 -24.94150 -23.03881 -20.62724 -19.37892 -17.93720 -16.80263 -16.63582 -16.06574 -15.08119 -14.65885 -14.31470 -14.10048 -13.69235 -13.44628 -13.09337 -12.82376 -12.70657 -12.42121 -11.85219 -11.61667 -11.52525 -11.27059 -11.24071 -11.18154 -10.77683 -10.58398 -10.45889 -10.42128 -10.34811 -9.47140 -9.30541 -8.66125 -8.08239 -7.40830 -6.52958 -4.10073 1.76428 2.69718 3.10002 3.19668 3.25724 3.57497 3.85063 3.98148 4.06567 4.57908 4.75527 4.82111 4.88459 5.08229 5.10019 5.19670 5.35377 5.48210 5.57246 5.67132 5.78890 5.90197 6.06318 6.07666 6.15789 6.24294 6.50209 6.62841 7.40004 7.83647 8.22325 8.69214 8.92856 9.10999 9.64695 10.50984 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.007119 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.126899 B = 3932.023540 C = 4236.908848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.248 3.752 3 C 0.216 3.784 4 N -0.434 5.434 5 C -0.303 4.303 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.885 5.885 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.475 3.525 14 O -0.559 6.559 15 C -0.067 4.067 16 H 0.093 0.907 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.091 4.091 21 S -0.234 6.234 22 H 0.085 0.915 23 H 0.139 0.861 24 H 0.274 0.726 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -1.289 11.114 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.070 4.070 3 C 0.089 3.911 4 N -0.154 5.154 5 C -0.430 4.430 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.261 3.739 14 O -0.441 6.441 15 C -0.199 4.199 16 H 0.111 0.889 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.159 4.159 20 C -0.239 4.239 21 S -0.008 6.008 22 H 0.103 0.897 23 H 0.156 0.844 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.304 -1.320 10.570 10.731 hybrid contribution -0.808 0.027 -0.682 1.058 sum 0.496 -1.293 9.888 9.984 Atomic orbital electron populations 1.80900 1.13556 1.08847 1.12461 1.29385 0.95430 0.92322 0.89818 1.18986 0.81356 0.91595 0.99197 1.43579 1.55839 1.06138 1.09842 1.19874 1.26453 1.15119 0.81596 0.87232 1.25381 0.95074 0.96305 1.00539 1.69747 1.25236 1.20945 1.36606 0.85694 0.78801 0.78403 0.80895 1.19024 1.20740 1.20372 1.19277 0.85028 0.83874 0.85676 1.90549 1.46840 1.31615 1.75056 1.23487 0.98597 1.01642 0.96146 0.88850 1.21524 1.01469 0.95177 0.95949 1.21553 0.97945 1.02560 0.94575 1.21702 0.98813 0.96131 0.99226 1.23483 1.03154 1.00129 0.97178 1.87106 1.22344 1.90364 1.00965 0.89733 0.84352 0.91485 0.90864 0.89545 0.91042 0.91945 0.90484 0.91241 0.87968 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.26 18.54 42.15 0.78 -10.48 16 2 C 0.25 5.53 12.28 -20.76 -0.25 5.28 16 3 C 0.22 4.47 4.78 -6.83 -0.03 4.44 16 4 N -0.43 -10.33 2.60 -117.94 -0.31 -10.63 16 5 C -0.30 -7.80 9.36 -14.93 -0.14 -7.94 16 6 H 0.11 2.97 7.34 -52.49 -0.39 2.58 16 7 C 0.03 0.74 5.14 -17.47 -0.09 0.65 16 8 N -0.89 -22.02 9.00 55.50 0.50 -21.52 16 9 Si 0.94 19.71 29.56 -169.99 -5.03 14.69 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.47 11.02 6.57 -10.98 -0.07 10.95 16 14 O -0.56 -14.73 16.00 5.55 0.09 -14.64 16 15 C -0.07 -1.24 2.03 -27.83 -0.06 -1.29 16 16 H 0.09 1.70 5.72 -51.92 -0.30 1.40 16 17 C -0.10 -1.68 4.65 -26.90 -0.13 -1.81 16 18 C -0.13 -1.62 5.61 -27.16 -0.15 -1.77 16 19 C -0.12 -1.31 5.75 -26.89 -0.15 -1.47 16 20 C -0.09 -1.06 6.45 37.21 0.24 -0.82 16 21 S -0.23 -3.81 21.28 -107.50 -2.29 -6.09 16 22 H 0.08 1.48 6.78 -51.93 -0.35 1.13 16 23 H 0.14 2.94 6.29 -51.93 -0.33 2.62 16 24 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.09 1.50 7.86 -51.93 -0.41 1.09 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -29.33 280.08 -6.72 -36.05 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.86 Total: 2.19 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.84 Total: 6.21 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.97 Total: -42.63 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.29 Total: -6.09 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.33 -6.72 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335985546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.825 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds