Wall clock time and date at job start Sun Mar 29 2020 23:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46997 * 23.85616 * 3 2 1 5 5 C 1.37106 * 120.00128 * 96.51108 * 4 3 2 6 6 H 1.07993 * 120.00236 * 158.50723 * 5 4 3 7 7 C 1.38948 * 119.99323 * 338.50733 * 5 4 3 8 8 N 1.31404 * 120.00360 * 350.90278 * 7 5 4 9 9 Si 1.86810 * 119.99577 * 170.90149 * 7 5 4 10 10 H 1.48501 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47180 * 119.99978 * 9 7 5 12 12 H 1.48493 * 109.47059 * 240.00054 * 9 7 5 13 13 C 1.34782 * 120.00464 * 276.50971 * 4 3 2 14 14 O 1.21289 * 120.00393 * 186.77537 * 13 4 3 15 15 C 1.50699 * 119.99416 * 6.50083 * 13 4 3 16 16 H 1.09005 * 109.57534 * 25.33418 * 15 13 4 17 17 C 1.53102 * 109.57576 * 145.72031 * 15 13 4 18 18 C 1.52576 * 109.95836 * 182.83335 * 17 15 13 19 19 C 1.52589 * 110.72205 * 289.32523 * 18 17 15 20 20 C 1.53095 * 109.95477 * 70.67830 * 19 18 17 21 21 S 1.81740 * 108.83934 * 296.97025 * 20 19 18 22 22 H 1.08996 * 109.47081 * 263.86016 * 3 2 1 23 23 H 1.08999 * 109.47175 * 143.85266 * 3 2 1 24 24 H 0.97005 * 119.99703 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.38852 * 302.98473 * 17 15 13 26 26 H 1.09004 * 109.38688 * 62.67910 * 17 15 13 27 27 H 1.09002 * 109.22777 * 169.00669 * 18 17 15 28 28 H 1.09000 * 109.19470 * 49.62317 * 18 17 15 29 29 H 1.08996 * 109.39041 * 310.52584 * 19 18 17 30 30 H 1.09004 * 109.38506 * 190.82388 * 19 18 17 31 31 H 1.09000 * 109.57238 * 177.16667 * 20 19 18 32 32 H 1.08996 * 109.68694 * 56.84611 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2623 -0.5586 5 6 3.4523 -1.3351 -1.8808 6 1 4.1183 -2.1152 -2.2188 7 6 2.9556 -0.4052 -2.7858 8 7 2.0113 0.4309 -2.4173 9 14 3.6305 -0.3435 -4.5267 10 1 4.6788 -1.3829 -4.6882 11 1 2.5314 -0.5953 -5.4929 12 1 4.2175 0.9963 -4.7828 13 6 3.1973 -2.3528 0.2271 14 8 3.7155 -3.3627 -0.2002 15 6 2.6710 -2.3153 1.6388 16 1 1.8846 -1.5643 1.7155 17 6 2.1100 -3.6895 2.0138 18 6 1.5113 -3.6425 3.4164 19 6 2.6093 -3.5144 4.4682 20 6 3.2335 -2.1179 4.4045 21 16 4.0221 -1.9011 2.7816 22 1 2.9713 0.1107 1.0217 23 1 2.9710 0.8306 -0.6062 24 1 1.6643 1.0798 -3.0493 25 1 1.3368 -3.9719 1.2995 26 1 2.9120 -4.4273 1.9871 27 1 0.9467 -4.5573 3.5965 28 1 0.8408 -2.7864 3.4913 29 1 3.3786 -4.2636 4.2813 30 1 2.1825 -3.6753 5.4582 31 1 3.9816 -2.0162 5.1906 32 1 2.4587 -1.3630 4.5379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335985546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:58 Heat of formation + Delta-G solvation = -24.142976 kcal Electronic energy + Delta-G solvation = -17031.571765 eV Core-core repulsion = 14310.852651 eV Total energy + Delta-G solvation = -2720.719113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83687 -37.90443 -37.37622 -36.22486 -33.88250 -32.49722 -29.42119 -28.67310 -26.63473 -24.35091 -21.70524 -21.06965 -19.80610 -18.48130 -18.14671 -17.70802 -16.64407 -16.14026 -15.78412 -15.57903 -14.97219 -14.87267 -14.72987 -14.36793 -13.99586 -13.95300 -13.53614 -13.33245 -13.18426 -12.95097 -12.53037 -12.46913 -12.36280 -12.17782 -12.08791 -11.83964 -11.56759 -11.18453 -10.74046 -10.41990 -9.97914 -8.68711 -8.42347 -6.07664 0.42547 1.39967 1.45417 1.55376 1.57986 1.80037 2.07585 2.20152 2.30251 2.91882 2.99208 3.47797 3.59995 3.72851 3.89796 3.94610 4.14578 4.19344 4.46103 4.52245 4.66258 4.73301 4.91004 4.93630 5.03990 5.07845 5.13662 5.35731 5.41289 5.95273 6.32350 6.89822 7.02743 7.23423 7.78955 8.59258 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.007119 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.126899 B = 3932.023540 C = 4236.908848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.259 3.741 3 C 0.222 3.778 4 N -0.447 5.447 5 C -0.335 4.335 6 H 0.085 0.915 7 C 0.004 3.996 8 N -0.898 5.898 9 Si 0.995 3.005 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.468 3.532 14 O -0.601 6.601 15 C -0.060 4.060 16 H 0.096 0.904 17 C -0.101 4.101 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.077 4.077 21 S -0.265 6.265 22 H 0.119 0.881 23 H 0.135 0.865 24 H 0.277 0.723 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -0.747 13.094 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.059 4.059 3 C 0.096 3.904 4 N -0.166 5.166 5 C -0.463 4.463 6 H 0.103 0.897 7 C -0.197 4.197 8 N -0.537 5.537 9 Si 0.818 3.182 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.256 3.744 14 O -0.486 6.486 15 C -0.192 4.192 16 H 0.114 0.886 17 C -0.141 4.141 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.225 4.225 21 S -0.039 6.039 22 H 0.137 0.863 23 H 0.152 0.848 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.147 0.853 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.093 -0.750 12.564 12.634 hybrid contribution -0.732 -0.181 -1.217 1.431 sum 0.361 -0.930 11.347 11.391 Atomic orbital electron populations 1.80894 1.14256 1.09628 1.13384 1.29640 0.95653 0.91556 0.89022 1.19111 0.80405 0.90129 1.00782 1.43727 1.56005 1.07400 1.09498 1.19775 1.27686 1.15630 0.83170 0.89722 1.26004 0.94907 0.95473 1.03364 1.69821 1.25378 1.20965 1.37535 0.84837 0.77853 0.78785 0.76676 1.19612 1.21053 1.18674 1.20082 0.83747 0.83046 0.87515 1.90506 1.48520 1.33107 1.76464 1.23246 0.99082 1.02937 0.93895 0.88603 1.21545 1.00499 0.93594 0.98447 1.21545 0.98546 1.03797 0.92142 1.21709 0.98114 0.95381 1.00330 1.23693 1.03965 1.01143 0.93691 1.87171 1.22356 1.90296 1.04047 0.86330 0.84786 0.91282 0.92819 0.91012 0.89126 0.91514 0.91030 0.87545 0.85255 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.41 18.54 20.01 0.37 -23.04 16 2 C 0.26 11.42 12.28 89.44 1.10 12.52 16 3 C 0.22 9.16 4.78 84.57 0.40 9.56 16 4 N -0.45 -21.70 2.60 -645.42 -1.68 -23.38 16 5 C -0.33 -17.78 9.36 84.04 0.79 -17.00 16 6 H 0.08 4.83 7.34 -2.91 -0.02 4.80 16 7 C 0.00 0.20 5.14 84.93 0.44 0.64 16 8 N -0.90 -44.54 9.00 21.66 0.19 -44.35 16 9 Si 0.99 40.62 29.56 68.60 2.03 42.65 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 13 C 0.47 22.27 6.57 87.66 0.58 22.85 16 14 O -0.60 -33.08 16.00 -3.06 -0.05 -33.12 16 15 C -0.06 -2.20 2.03 29.88 0.06 -2.14 16 16 H 0.10 3.41 5.72 -2.38 -0.01 3.39 16 17 C -0.10 -3.32 4.65 30.49 0.14 -3.18 16 18 C -0.12 -2.75 5.61 30.32 0.17 -2.58 16 19 C -0.12 -2.09 5.75 30.49 0.18 -1.92 16 20 C -0.08 -1.49 6.45 72.01 0.46 -1.03 16 21 S -0.26 -8.18 21.28 -56.49 -1.20 -9.38 16 22 H 0.12 4.02 6.78 -2.39 -0.02 4.00 16 23 H 0.13 5.68 6.29 -2.39 -0.02 5.67 16 24 H 0.28 13.17 8.31 -92.70 -0.77 12.40 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.53 7.86 -2.38 -0.02 2.51 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 29 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 30 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.89 280.08 5.11 -59.78 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.13 Total: 13.11 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.31 Total: 17.74 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -1.11 Total: -90.77 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.20 Total: -9.38 kcal Total: -64.89 5.11 -59.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335985546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.637 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds