Wall clock time and date at job start Sun Mar 29 2020 23:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36003 * 116.99951 * 2 1 4 4 C 1.38714 * 119.97481 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.02525 * 180.02562 * 4 3 2 6 6 C 1.38920 * 119.97207 * 0.26006 * 5 4 3 7 7 S 1.76201 * 120.02056 * 179.72191 * 6 5 4 8 8 C 1.81400 * 103.00029 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47271 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.46896 * 304.99812 * 9 8 7 11 11 O 1.42898 * 109.46962 * 65.00043 * 9 8 7 12 12 C 1.50696 * 109.46867 * 184.99737 * 9 8 7 13 13 H 1.08005 * 120.00508 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00015 * 179.97438 * 12 9 8 15 15 N 1.31521 * 119.99751 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00473 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47490 * 89.99915 * 16 14 12 18 18 H 1.48505 * 109.47571 * 210.00072 * 16 14 12 19 19 H 1.48507 * 109.46914 * 329.99758 * 16 14 12 20 20 C 1.38916 * 119.95241 * 359.48316 * 6 5 4 21 21 C 1.38089 * 119.97674 * 0.51584 * 20 6 5 22 22 H 1.08997 * 109.47149 * 300.00612 * 1 2 3 23 23 H 1.08996 * 109.47019 * 60.00527 * 1 2 3 24 24 H 1.08996 * 109.47047 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.98656 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.00934 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.46518 * 299.99885 * 8 7 6 28 28 H 1.08995 * 109.47409 * 59.99617 * 8 7 6 29 29 H 0.96697 * 114.00606 * 59.99692 * 11 9 8 30 30 H 0.97006 * 119.99677 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.01602 * 180.23187 * 20 6 5 32 32 H 1.07999 * 119.99249 * 179.72480 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0011 6 6 3.3036 3.6790 0.0065 7 16 4.1036 5.2489 0.0146 8 6 2.7140 6.4150 0.0206 9 6 3.2506 7.8478 0.0287 10 1 3.9297 7.9767 0.8714 11 8 3.9512 8.1009 -1.1908 12 6 2.1012 8.8138 0.1574 13 1 1.0891 8.4430 0.2262 14 6 2.3415 10.1711 0.1874 15 7 3.5739 10.6227 0.1042 16 14 0.9169 11.3687 0.3477 17 1 0.6533 11.6350 1.7846 18 1 1.2603 12.6411 -0.3367 19 1 -0.2957 10.7820 -0.2775 20 6 1.9164 3.6057 0.0006 21 6 1.2905 2.3748 0.0000 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 4.0194 0.3777 0.0014 26 1 5.1383 2.5694 0.0019 27 1 2.1055 6.2594 -0.8702 28 1 2.1053 6.2503 0.9097 29 1 3.4071 8.0044 -1.9844 30 1 3.7430 11.5777 0.1249 31 1 1.3275 4.5111 0.0010 32 1 0.2120 2.3176 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352152145.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:19 Heat of formation + Delta-G solvation = -88.842679 kcal Electronic energy + Delta-G solvation = -15754.500144 eV Core-core repulsion = 12998.682690 eV Total energy + Delta-G solvation = -2755.817454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99043 -38.30144 -37.91916 -34.30394 -32.48458 -31.47586 -31.10225 -28.22635 -27.35214 -23.87154 -23.49630 -22.60908 -19.28159 -19.25545 -18.19657 -17.11734 -16.71681 -16.63717 -16.34620 -16.13361 -15.70501 -15.50682 -14.77927 -14.61975 -14.25928 -14.02718 -13.46295 -13.32394 -13.13969 -12.84690 -12.79255 -12.52462 -12.20385 -12.02622 -11.84314 -11.40883 -10.95623 -10.72028 -10.31932 -10.13731 -9.99635 -8.18442 -8.15800 -6.45544 0.25812 0.27926 0.65883 1.42071 1.42357 1.53336 1.63037 2.36921 2.38513 2.64940 3.08974 3.75288 3.86587 4.05621 4.15366 4.22919 4.28565 4.34344 4.40451 4.46690 4.58427 4.73894 4.83255 4.93817 5.04167 5.26175 5.32074 5.50194 5.62946 5.63402 5.95246 6.39784 6.64359 7.27738 7.46393 8.87114 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.004383 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.876146 B = 6387.210060 C = 7062.001647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.110 3.890 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.130 4.130 7 S -0.146 6.146 8 C -0.101 4.101 9 C 0.246 3.754 10 H 0.028 0.972 11 O -0.573 6.573 12 C -0.585 4.585 13 H 0.067 0.933 14 C 0.027 3.973 15 N -0.898 5.898 16 Si 0.966 3.034 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.261 1.261 20 C -0.107 4.107 21 C -0.187 4.187 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.122 0.878 25 H 0.155 0.845 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.358 0.642 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -18.954 -0.593 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.063 3.937 4 C -0.155 4.155 5 C -0.094 4.094 6 C -0.243 4.243 7 S 0.099 5.901 8 C -0.249 4.249 9 C 0.187 3.813 10 H 0.046 0.954 11 O -0.377 6.377 12 C -0.624 4.624 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.131 4.131 21 C -0.207 4.207 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.140 0.860 25 H 0.172 0.828 26 H 0.161 0.839 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.204 0.796 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.921 -18.525 -0.171 19.168 hybrid contribution -2.440 0.747 -0.166 2.557 sum -7.361 -17.778 -0.337 19.245 Atomic orbital electron populations 1.23351 0.76574 1.05679 1.02151 1.86066 1.23332 1.26175 1.88755 1.19129 0.92627 0.84556 0.97416 1.20566 0.91738 0.98382 1.04860 1.20771 1.00292 0.89675 0.98635 1.21935 0.96798 0.97365 1.08224 1.85796 1.16012 0.96000 1.92308 1.24449 0.97808 0.97763 1.04898 1.18931 0.91272 0.86592 0.84481 0.95408 1.86547 1.41638 1.93432 1.16052 1.21913 0.93842 0.92084 1.54565 0.91480 1.25936 0.98139 1.00399 0.93120 1.70227 1.21261 1.14379 1.47611 0.85465 0.79245 0.77864 0.78441 1.19849 1.20933 1.18521 1.21178 0.92914 0.98685 1.00295 1.21339 1.01146 0.91212 1.06981 0.91943 0.91906 0.85960 0.82764 0.83878 0.89536 0.89551 0.79649 0.92758 0.85580 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.80 10.50 -93.59 -0.98 -7.78 16 3 C 0.11 2.63 6.69 22.50 0.15 2.78 16 4 C -0.14 -3.21 9.98 22.35 0.22 -2.99 16 5 C -0.07 -1.90 9.79 22.40 0.22 -1.68 16 6 C -0.13 -4.13 6.11 22.60 0.14 -3.99 16 7 S -0.15 -5.52 21.70 -56.49 -1.23 -6.75 16 8 C -0.10 -4.07 3.93 71.98 0.28 -3.78 16 9 C 0.25 12.51 2.82 29.85 0.08 12.59 16 10 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 11 O -0.57 -29.76 12.49 -148.98 -1.86 -31.62 16 12 C -0.58 -31.19 8.76 25.60 0.22 -30.97 16 13 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 14 C 0.03 1.49 5.40 84.65 0.46 1.95 16 15 N -0.90 -53.16 12.84 21.45 0.28 -52.89 16 16 Si 0.97 42.19 29.54 68.60 2.03 44.21 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 C -0.11 -3.09 9.36 22.40 0.21 -2.88 16 21 C -0.19 -4.48 9.03 22.35 0.20 -4.27 16 22 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 23 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 24 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 26 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 27 H 0.09 3.25 7.73 -2.39 -0.02 3.23 16 28 H 0.09 3.35 7.76 -2.39 -0.02 3.33 16 29 H 0.36 16.30 9.04 -74.06 -0.67 15.63 16 30 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 31 H 0.13 3.64 5.87 -2.91 -0.02 3.63 16 32 H 0.15 2.77 6.29 -2.91 -0.02 2.75 16 Total: -1.00 -65.29 290.51 2.00 -63.29 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.46 Total: 23.47 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.30 Total: -31.94 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.28 Total: -52.89 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -2.84 Total: -39.39 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: -5.52 SS G_CDS: -1.23 Total: -6.75 kcal Total: -65.29 2.00 -63.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352152145.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.557 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds