Wall clock time and date at job start Sun Mar 29 2020 23:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47244 * 264.77266 * 3 2 1 5 5 H 1.48499 * 109.47050 * 24.77434 * 3 2 1 6 6 H 1.48502 * 109.46919 * 144.77611 * 3 2 1 7 7 C 1.37880 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99851 * 6.05790 * 7 2 1 9 9 C 1.50701 * 119.99735 * 186.05744 * 7 2 1 10 10 O 1.42905 * 110.35095 * 61.56377 * 9 7 2 11 11 C 1.54590 * 110.30869 * 183.70332 * 9 7 2 12 12 C 1.54939 * 102.92180 * 140.87258 * 11 9 7 13 13 N 1.48531 * 103.22841 * 322.58883 * 12 11 9 14 14 C 1.46904 * 111.00266 * 159.71638 * 13 12 11 15 15 C 1.50694 * 109.46644 * 52.60507 * 14 13 12 16 16 C 1.33639 * 122.75161 * 95.00610 * 15 14 13 17 17 S 1.76201 * 107.92830 * 180.26120 * 16 15 14 18 18 C 1.70982 * 90.28053 * 359.65331 * 17 16 15 19 19 N 1.29029 * 110.16751 * 0.35321 * 18 17 16 20 20 C 1.47902 * 105.81825 * 39.20439 * 13 12 11 21 21 H 0.97008 * 119.99085 * 359.97438 * 1 2 3 22 22 H 0.96705 * 113.99908 * 57.85715 * 10 9 7 23 23 H 1.08993 * 110.72595 * 259.23201 * 11 9 7 24 24 H 1.09002 * 110.72349 * 22.34077 * 11 9 7 25 25 H 1.08998 * 110.67217 * 204.14927 * 12 11 9 26 26 H 1.09002 * 110.66795 * 81.02028 * 12 11 9 27 27 H 1.09004 * 109.46859 * 292.60635 * 14 13 12 28 28 H 1.08998 * 109.46945 * 172.60135 * 14 13 12 29 29 H 1.07998 * 126.03566 * 359.97438 * 16 15 14 30 30 H 1.07999 * 124.91728 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.92199 * 94.02611 * 20 13 12 32 32 H 1.09001 * 109.91873 * 215.31565 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6072 1.9826 -1.3942 5 1 1.3959 2.6820 0.5867 6 1 3.4873 1.4744 0.8075 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1267 -0.0997 9 6 3.5052 -1.1979 0.1372 10 8 3.8909 -0.6248 1.3881 11 6 4.0514 -2.6390 0.0161 12 6 5.3514 -2.4489 -0.8053 13 7 4.9871 -1.3861 -1.7768 14 6 6.1870 -0.7321 -2.3161 15 6 7.1288 -1.7772 -2.8561 16 6 7.1522 -2.1331 -4.1440 17 16 8.3834 -3.3782 -4.3404 18 6 8.7515 -3.2890 -2.6730 19 7 7.9971 -2.4150 -2.0970 20 6 4.1507 -0.4239 -1.0271 21 1 -0.4849 0.8402 0.0004 22 1 3.5139 -1.0716 2.1584 23 1 4.2739 -3.0512 1.0003 24 1 3.3451 -3.2758 -0.5165 25 1 5.6168 -3.3700 -1.3242 26 1 6.1678 -2.1193 -0.1627 27 1 6.6823 -0.1713 -1.5235 28 1 5.9005 -0.0519 -3.1182 29 1 6.5238 -1.7321 -4.9255 30 1 9.5027 -3.8825 -2.1732 31 1 4.7714 0.3830 -0.6376 32 1 3.3762 -0.0189 -1.6784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147377.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:47 Heat of formation + Delta-G solvation = 18.701052 kcal Electronic energy + Delta-G solvation = -16985.523231 eV Core-core repulsion = 14266.661974 eV Total energy + Delta-G solvation = -2718.861257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05279 -38.33885 -35.01222 -32.33177 -31.67058 -29.49184 -28.32267 -26.24299 -24.61722 -23.64708 -20.94981 -19.68565 -19.33106 -18.05185 -17.02591 -15.88057 -15.60945 -15.21440 -14.60867 -14.35044 -13.82930 -13.55617 -13.30134 -13.06834 -12.72867 -12.45168 -12.00396 -11.77151 -11.46289 -11.22723 -10.88915 -10.73444 -10.28563 -10.08002 -9.95452 -9.69155 -9.49432 -8.99479 -8.94208 -8.64754 -8.32272 -7.87349 -6.13773 -4.22107 0.69578 1.34633 1.66799 2.75754 3.33156 3.43998 3.63878 4.15529 4.47649 4.63433 4.99238 5.16031 5.17770 5.30136 5.40697 5.55430 5.82451 5.84334 5.94174 6.06276 6.10811 6.20910 6.29769 6.58517 6.70452 6.94186 7.14569 7.41012 7.56561 7.63767 7.71215 8.29785 8.85076 9.02311 9.50898 10.97149 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.041105 B = 0.005724 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.017319 B = 4890.383320 C = 5045.855182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.231 1.231 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.213 3.787 10 O -0.581 6.581 11 C -0.136 4.136 12 C 0.047 3.953 13 N -0.506 5.506 14 C 0.115 3.885 15 C 0.075 3.925 16 C -0.233 4.233 17 S 0.098 5.902 18 C 0.020 3.980 19 N -0.460 5.460 20 C 0.044 3.956 21 H 0.265 0.735 22 H 0.364 0.636 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.179 0.821 30 H 0.197 0.803 31 H 0.038 0.962 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.534 -5.066 -7.035 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.154 1.154 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.173 3.827 10 O -0.388 6.388 11 C -0.174 4.174 12 C -0.080 4.080 13 N -0.231 5.231 14 C -0.016 4.016 15 C -0.056 4.056 16 C -0.372 4.372 17 S 0.349 5.651 18 C -0.279 4.279 19 N -0.174 5.174 20 C -0.083 4.083 21 H 0.075 0.925 22 H 0.211 0.789 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.196 0.804 30 H 0.214 0.786 31 H 0.056 0.944 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.889 -5.274 -8.114 19.465 hybrid contribution -0.099 1.392 1.182 1.829 sum 16.789 -3.882 -6.931 18.574 Atomic orbital electron populations 1.69950 1.06598 1.27376 1.48791 1.24992 0.94577 0.99547 0.92792 0.87130 0.82030 0.82553 0.78668 1.20929 1.22510 1.15363 1.21363 0.89098 0.94976 1.52660 0.90518 1.19813 0.93963 0.87561 0.81357 1.86467 1.75406 1.60632 1.16256 1.23077 0.95882 0.99684 0.98779 1.23078 0.97204 0.94580 0.93187 1.65005 1.14106 1.10923 1.33045 1.20864 0.88769 0.92190 0.99729 1.20243 0.96655 0.99569 0.89171 1.26857 1.05198 1.03769 1.01404 1.83929 1.32223 1.36768 1.12130 1.28355 1.03491 1.01209 0.94859 1.66172 1.05727 1.07611 1.37909 1.23296 0.96038 0.93798 0.95178 0.92535 0.78874 0.92165 0.90679 0.91956 0.93552 0.93049 0.89266 0.80352 0.78611 0.94388 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 2 C 0.09 2.44 5.39 -17.82 -0.10 2.35 16 3 Si 0.87 21.91 23.85 -169.99 -4.05 17.85 16 4 H -0.28 -6.93 6.95 56.52 0.39 -6.54 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.23 -5.76 5.42 56.52 0.31 -5.45 16 7 C -0.54 -15.11 8.67 -34.44 -0.30 -15.41 16 8 H 0.08 2.31 7.82 -52.49 -0.41 1.90 16 9 C 0.21 5.05 0.84 -90.42 -0.08 4.98 16 10 O -0.58 -13.48 10.45 -35.23 -0.37 -13.85 16 11 C -0.14 -2.83 6.34 -24.87 -0.16 -2.99 16 12 C 0.05 0.90 5.10 -1.90 -0.01 0.90 16 13 N -0.51 -10.01 5.39 -231.89 -1.25 -11.26 16 14 C 0.12 1.92 5.47 -4.98 -0.03 1.89 16 15 C 0.07 1.11 5.28 -84.23 -0.44 0.66 16 16 C -0.23 -2.87 11.11 29.12 0.32 -2.54 16 17 S 0.10 0.96 23.22 -107.50 -2.50 -1.54 16 18 C 0.02 0.21 12.23 51.59 0.63 0.84 16 19 N -0.46 -6.71 9.63 -11.90 -0.11 -6.83 16 20 C 0.04 1.00 4.12 -2.76 -0.01 0.99 16 21 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.36 7.39 9.07 45.56 0.41 7.80 16 23 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 24 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 25 H 0.06 1.15 7.81 -51.93 -0.41 0.74 16 26 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 27 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 28 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 29 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.04 0.86 6.53 -51.93 -0.34 0.52 16 32 H 0.09 2.23 5.79 -51.93 -0.30 1.93 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -32.07 271.55 -6.77 -38.83 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.18 Total: 7.29 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.17 Total: -8.34 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.59 Total: -44.35 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.37 Total: -13.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.05 Total: 17.85 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.07 -6.77 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147377.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.535 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds