Wall clock time and date at job start Sun Mar 29 2020 23:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47244 * 264.77266 * 3 2 1 5 5 H 1.48499 * 109.47050 * 24.77434 * 3 2 1 6 6 H 1.48502 * 109.46919 * 144.77611 * 3 2 1 7 7 C 1.37880 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99851 * 6.05790 * 7 2 1 9 9 C 1.50701 * 119.99735 * 186.05744 * 7 2 1 10 10 O 1.42905 * 110.35095 * 61.56377 * 9 7 2 11 11 C 1.54590 * 110.30869 * 183.70332 * 9 7 2 12 12 C 1.54939 * 102.92180 * 140.87258 * 11 9 7 13 13 N 1.48531 * 103.22841 * 322.58883 * 12 11 9 14 14 C 1.46904 * 111.00266 * 159.71638 * 13 12 11 15 15 C 1.50694 * 109.46644 * 52.60507 * 14 13 12 16 16 C 1.33639 * 122.75161 * 95.00610 * 15 14 13 17 17 S 1.76201 * 107.92830 * 180.26120 * 16 15 14 18 18 C 1.70982 * 90.28053 * 359.65331 * 17 16 15 19 19 N 1.29029 * 110.16751 * 0.35321 * 18 17 16 20 20 C 1.47902 * 105.81825 * 39.20439 * 13 12 11 21 21 H 0.97008 * 119.99085 * 359.97438 * 1 2 3 22 22 H 0.96705 * 113.99908 * 57.85715 * 10 9 7 23 23 H 1.08993 * 110.72595 * 259.23201 * 11 9 7 24 24 H 1.09002 * 110.72349 * 22.34077 * 11 9 7 25 25 H 1.08998 * 110.67217 * 204.14927 * 12 11 9 26 26 H 1.09002 * 110.66795 * 81.02028 * 12 11 9 27 27 H 1.09004 * 109.46859 * 292.60635 * 14 13 12 28 28 H 1.08998 * 109.46945 * 172.60135 * 14 13 12 29 29 H 1.07998 * 126.03566 * 359.97438 * 16 15 14 30 30 H 1.07999 * 124.91728 * 180.02562 * 18 17 16 31 31 H 1.09003 * 109.92199 * 94.02611 * 20 13 12 32 32 H 1.09001 * 109.91873 * 215.31565 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6072 1.9826 -1.3942 5 1 1.3959 2.6820 0.5867 6 1 3.4873 1.4744 0.8075 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1267 -0.0997 9 6 3.5052 -1.1979 0.1372 10 8 3.8909 -0.6248 1.3881 11 6 4.0514 -2.6390 0.0161 12 6 5.3514 -2.4489 -0.8053 13 7 4.9871 -1.3861 -1.7768 14 6 6.1870 -0.7321 -2.3161 15 6 7.1288 -1.7772 -2.8561 16 6 7.1522 -2.1331 -4.1440 17 16 8.3834 -3.3782 -4.3404 18 6 8.7515 -3.2890 -2.6730 19 7 7.9971 -2.4150 -2.0970 20 6 4.1507 -0.4239 -1.0271 21 1 -0.4849 0.8402 0.0004 22 1 3.5139 -1.0716 2.1584 23 1 4.2739 -3.0512 1.0003 24 1 3.3451 -3.2758 -0.5165 25 1 5.6168 -3.3700 -1.3242 26 1 6.1678 -2.1193 -0.1627 27 1 6.6823 -0.1713 -1.5235 28 1 5.9005 -0.0519 -3.1182 29 1 6.5238 -1.7321 -4.9255 30 1 9.5027 -3.8825 -2.1732 31 1 4.7714 0.3830 -0.6376 32 1 3.3762 -0.0189 -1.6784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147377.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:47 Heat of formation + Delta-G solvation = -8.247707 kcal Electronic energy + Delta-G solvation = -16986.691817 eV Core-core repulsion = 14266.661974 eV Total energy + Delta-G solvation = -2720.029843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15540 -39.90053 -36.70115 -34.49835 -33.01729 -30.81610 -30.13967 -27.61889 -25.92930 -25.25997 -22.49743 -21.44216 -20.43094 -19.13717 -18.95174 -17.37147 -17.09036 -16.59282 -16.29754 -15.83051 -15.39052 -14.88187 -14.77610 -14.52105 -14.12528 -14.03969 -13.64292 -13.45723 -13.27054 -12.68512 -12.47587 -12.28345 -12.04497 -11.93540 -11.86822 -10.99506 -10.80393 -10.58050 -10.37476 -10.29013 -9.84555 -9.38633 -8.36680 -6.48282 -0.16758 0.52712 0.80871 1.32609 1.38755 1.61348 1.76495 2.36792 2.97242 3.08397 3.33773 3.60860 3.86520 4.13064 4.15206 4.22325 4.39163 4.40575 4.48054 4.55942 4.68121 4.77533 4.88437 4.99847 5.14291 5.24993 5.33411 5.57677 5.82731 6.03295 6.09860 6.61728 6.81530 7.16054 7.32385 8.77877 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.041105 B = 0.005724 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.017319 B = 4890.383320 C = 5045.855182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.037 3.963 3 Si 0.929 3.071 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.224 1.224 7 C -0.544 4.544 8 H 0.039 0.961 9 C 0.209 3.791 10 O -0.584 6.584 11 C -0.133 4.133 12 C 0.065 3.935 13 N -0.513 5.513 14 C 0.116 3.884 15 C 0.049 3.951 16 C -0.243 4.243 17 S 0.167 5.833 18 C 0.016 3.984 19 N -0.500 5.500 20 C 0.050 3.950 21 H 0.267 0.733 22 H 0.376 0.624 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.102 0.898 29 H 0.191 0.809 30 H 0.228 0.772 31 H 0.039 0.961 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.174 -5.476 -7.938 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.163 4.163 3 Si 0.754 3.246 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.147 1.147 7 C -0.582 4.582 8 H 0.058 0.942 9 C 0.169 3.831 10 O -0.392 6.392 11 C -0.172 4.172 12 C -0.063 4.063 13 N -0.238 5.238 14 C -0.015 4.015 15 C -0.082 4.082 16 C -0.383 4.383 17 S 0.419 5.581 18 C -0.282 4.282 19 N -0.214 5.214 20 C -0.078 4.078 21 H 0.076 0.924 22 H 0.225 0.775 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.208 0.792 30 H 0.245 0.755 31 H 0.057 0.943 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.554 -5.708 -9.024 22.279 hybrid contribution -0.879 1.369 1.402 2.148 sum 18.674 -4.339 -7.621 20.631 Atomic orbital electron populations 1.70068 1.08243 1.28292 1.50847 1.25731 0.95126 1.02872 0.92583 0.86187 0.80750 0.78448 0.79211 1.19778 1.22758 1.14651 1.21599 0.91507 0.93424 1.51669 0.94249 1.19757 0.91536 0.89801 0.81972 1.86419 1.75219 1.61067 1.16495 1.23014 0.96415 0.97631 1.00099 1.22909 0.95794 0.94814 0.92757 1.64937 1.15838 1.10591 1.32421 1.20860 0.87856 0.93049 0.99704 1.19996 0.97570 1.00502 0.90156 1.27130 1.05903 1.04309 1.00979 1.83726 1.29775 1.34262 1.10340 1.28922 1.03051 1.00188 0.96020 1.66143 1.06940 1.09194 1.39147 1.23037 0.96014 0.94302 0.94481 0.92387 0.77516 0.90348 0.92027 0.90917 0.93668 0.93993 0.87977 0.79183 0.75529 0.94298 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 2 C 0.04 2.14 5.39 84.65 0.46 2.60 16 3 Si 0.93 45.59 23.85 68.60 1.64 47.23 16 4 H -0.27 -12.77 6.95 99.48 0.69 -12.08 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.22 -10.67 5.42 99.48 0.54 -10.13 16 7 C -0.54 -30.88 8.67 25.60 0.22 -30.66 16 8 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 9 C 0.21 9.86 0.84 -10.66 -0.01 9.85 16 10 O -0.58 -26.37 10.45 -148.98 -1.56 -27.93 16 11 C -0.13 -5.45 6.34 31.80 0.20 -5.25 16 12 C 0.06 2.39 5.10 86.65 0.44 2.83 16 13 N -0.51 -19.75 5.39 -887.57 -4.78 -24.53 16 14 C 0.12 3.69 5.47 85.55 0.47 4.16 16 15 C 0.05 1.36 5.28 41.52 0.22 1.58 16 16 C -0.24 -5.37 11.11 66.78 0.74 -4.63 16 17 S 0.17 2.66 23.22 -56.49 -1.31 1.35 16 18 C 0.02 0.30 12.23 130.65 1.60 1.89 16 19 N -0.50 -13.45 9.63 -191.55 -1.84 -15.30 16 20 C 0.05 2.21 4.12 86.45 0.36 2.56 16 21 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 22 H 0.38 14.83 9.07 -74.05 -0.67 14.15 16 23 H 0.08 2.87 8.08 -2.39 -0.02 2.85 16 24 H 0.06 2.66 7.70 -2.39 -0.02 2.65 16 25 H 0.07 2.54 7.81 -2.39 -0.02 2.52 16 26 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16 27 H 0.04 1.41 7.81 -2.39 -0.02 1.39 16 28 H 0.10 2.89 8.10 -2.39 -0.02 2.87 16 29 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.23 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.04 1.71 6.53 -2.39 -0.02 1.70 16 32 H 0.07 3.42 5.79 -2.39 -0.01 3.41 16 Total: -1.00 -69.29 271.55 -2.58 -71.87 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.28 Total: 20.28 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.70 Total: -15.07 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -6.33 Total: -97.73 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.56 Total: -27.93 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.64 Total: 47.23 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.35 kcal Total: -69.29 -2.58 -71.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147377.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.620 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds