Wall clock time and date at job start Sun Mar 29 2020 23:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32561 * 119.22481 * 359.72684 * 12 11 10 14 14 C 1.32254 * 120.73551 * 179.71922 * 13 12 11 15 15 C 1.38624 * 119.20200 * 0.54564 * 14 13 12 16 16 C 1.50704 * 120.71426 * 179.70818 * 15 14 13 17 17 C 1.53007 * 109.46870 * 270.02423 * 16 15 14 18 18 O 1.42908 * 109.46729 * 179.97438 * 17 16 15 19 19 C 1.38619 * 118.57093 * 359.73398 * 15 14 13 20 20 N 1.32255 * 119.20153 * 359.97438 * 19 15 14 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 1.07996 * 120.40190 * 180.27953 * 14 13 12 27 27 H 1.08997 * 109.47035 * 30.02328 * 16 15 14 28 28 H 1.09001 * 109.47318 * 150.02963 * 16 15 14 29 29 H 1.08997 * 109.47214 * 299.99795 * 17 16 15 30 30 H 1.08993 * 109.46991 * 60.00288 * 17 16 15 31 31 H 0.96696 * 113.99782 * 179.97438 * 18 17 16 32 32 H 1.08007 * 120.39911 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3404 -5.2296 0.0013 12 6 2.6901 -6.3621 0.0019 13 7 3.9295 -5.8919 -0.0038 14 6 4.9648 -6.7149 0.0021 15 6 4.7411 -8.0830 0.0029 16 6 5.8956 -9.0517 0.0029 17 6 6.2861 -9.3797 -1.4397 18 8 7.3813 -10.2978 -1.4397 19 6 3.4327 -8.5409 0.0030 20 7 2.4424 -7.6643 0.0030 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 5.9722 -6.3260 0.0020 27 1 6.7460 -8.6034 0.5165 28 1 5.6019 -9.9670 0.5168 29 1 5.4357 -9.8280 -1.9534 30 1 6.5798 -8.4645 -1.9536 31 1 7.6822 -10.5510 -2.3230 32 1 3.2246 -9.6007 0.0032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601096348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:06 Heat of formation + Delta-G solvation = -24.462151 kcal Electronic energy + Delta-G solvation = -15374.330570 eV Core-core repulsion = 12653.597616 eV Total energy + Delta-G solvation = -2720.732954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90263 -37.42917 -34.13052 -33.89902 -33.57685 -30.91298 -29.26972 -25.51168 -24.68513 -24.51973 -22.03232 -21.15613 -18.22366 -17.87426 -17.74091 -16.55364 -15.37511 -15.21405 -15.09309 -14.52231 -14.37566 -14.20978 -13.63988 -13.60474 -13.46114 -12.32936 -12.17296 -11.85272 -11.71680 -11.06191 -10.91913 -10.89576 -10.62396 -10.37623 -10.35879 -10.03713 -9.80297 -9.69132 -9.25000 -9.12039 -8.44569 -7.38126 -6.08487 -4.12727 0.71387 1.09184 1.64266 2.79209 3.28934 3.35264 3.38943 3.56077 3.88235 4.22805 4.40968 4.47632 4.52031 4.66404 4.75986 4.91405 5.01530 5.16691 5.27529 5.50994 5.62786 5.82059 6.01798 6.19897 6.23781 6.70146 6.90549 7.20437 7.49270 7.55904 7.87205 7.92921 8.24274 8.91869 9.51392 11.02520 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.036528 B = 0.003755 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.341997 B = 7454.101033 C = 8086.604115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.082 4.082 11 S -0.015 6.015 12 C 0.300 3.700 13 N -0.518 5.518 14 C 0.170 3.830 15 C -0.221 4.221 16 C -0.063 4.063 17 C 0.079 3.921 18 O -0.576 6.576 19 C 0.167 3.833 20 N -0.506 5.506 21 H 0.263 0.737 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.167 0.833 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.382 0.618 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.267 -18.344 -2.155 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.231 4.231 11 S 0.225 5.775 12 C -0.074 4.074 13 N -0.235 5.235 14 C 0.000 4.000 15 C -0.230 4.230 16 C -0.101 4.101 17 C 0.001 3.999 18 O -0.381 6.381 19 C -0.003 4.003 20 N -0.223 5.223 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.184 0.816 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.229 0.771 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.942 -17.613 -1.507 19.810 hybrid contribution 2.583 0.413 -0.636 2.692 sum 11.525 -17.200 -2.144 20.815 Atomic orbital electron populations 1.69962 1.06087 1.26966 1.50022 1.25014 0.94912 0.99353 0.94998 0.86494 0.79785 0.82963 0.78193 1.20537 1.21112 1.19742 1.21056 0.93150 0.89902 1.51718 0.92173 1.18995 0.93439 0.89572 0.98560 1.23998 1.02025 0.91529 1.05504 1.86118 1.05021 0.98605 1.87747 1.25490 0.95370 0.93173 0.93334 1.68972 0.98950 1.39549 1.16042 1.23162 0.98490 0.89186 0.89128 1.21255 0.96778 0.96466 1.08488 1.20195 0.95480 0.98104 0.96356 1.22180 0.88701 0.92163 0.96815 1.86442 1.52016 1.65596 1.34094 1.23146 0.87705 0.99821 0.89662 1.68629 1.36115 1.01862 1.15674 0.92728 0.95455 0.95422 0.89843 0.89839 0.81610 0.89852 0.89891 0.93425 0.93374 0.77129 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.86 4.98 -27.88 -0.14 0.72 16 10 C -0.08 -1.75 4.75 37.16 0.18 -1.57 16 11 S -0.01 -0.28 22.25 -107.50 -2.39 -2.67 16 12 C 0.30 5.29 7.85 -90.83 -0.71 4.58 16 13 N -0.52 -8.62 9.14 -13.44 -0.12 -8.74 16 14 C 0.17 2.13 11.00 -17.23 -0.19 1.94 16 15 C -0.22 -2.33 5.17 -104.34 -0.54 -2.87 16 16 C -0.06 -0.49 5.76 -27.88 -0.16 -0.65 16 17 C 0.08 0.58 7.03 37.16 0.26 0.84 16 18 O -0.58 -4.33 13.66 -35.23 -0.48 -4.82 16 19 C 0.17 1.98 11.00 -17.23 -0.19 1.79 16 20 N -0.51 -8.08 10.40 -13.44 -0.14 -8.22 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 1.77 8.11 -51.92 -0.42 1.35 16 25 H 0.08 1.78 8.11 -51.91 -0.42 1.36 16 26 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.38 1.22 9.12 45.56 0.42 1.63 16 32 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -32.43 297.97 -8.18 -40.61 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.35 Total: -2.92 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.90 Total: -8.37 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.47 Total: -42.62 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.48 Total: -4.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.39 Total: -2.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.43 -8.18 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601096348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds