Wall clock time and date at job start Sun Mar 29 2020 23:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99781 * 2 1 4 4 H 1.48499 * 109.47268 * 239.99744 * 3 2 1 5 5 H 1.48505 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47067 * 119.99733 * 3 2 1 7 7 C 1.37878 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99886 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.87768 * 62.38712 * 9 7 2 11 11 C 1.55147 * 110.98670 * 298.54550 * 9 7 2 12 12 C 1.54321 * 103.01469 * 206.25778 * 11 9 7 13 13 N 1.47439 * 107.23713 * 22.28151 * 12 11 9 14 14 C 1.46893 * 111.00357 * 123.25923 * 13 12 11 15 15 C 1.50706 * 109.47176 * 69.87223 * 14 13 12 16 16 C 1.35136 * 127.24618 * 89.70933 * 15 14 13 17 17 C 1.37810 * 114.76194 * 179.87126 * 16 15 14 18 18 N 1.30086 * 116.87578 * 0.44060 * 17 16 15 19 19 S 1.69600 * 107.15506 * 359.76616 * 18 17 16 20 20 C 1.47847 * 108.56732 * 0.99025 * 13 12 11 21 21 H 0.96992 * 120.00238 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99630 * 297.61567 * 10 9 7 23 23 H 1.08999 * 110.70703 * 87.87516 * 11 9 7 24 24 H 1.08998 * 110.85365 * 324.70181 * 11 9 7 25 25 H 1.09005 * 109.88495 * 262.87667 * 12 11 9 26 26 H 1.08998 * 109.89238 * 141.68972 * 12 11 9 27 27 H 1.09001 * 109.46739 * 309.87631 * 14 13 12 28 28 H 1.09000 * 109.47767 * 189.87890 * 14 13 12 29 29 H 1.08002 * 122.62005 * 0.03788 * 16 15 14 30 30 H 1.07993 * 121.56108 * 180.21118 * 17 16 15 31 31 H 1.08995 * 110.37157 * 94.73369 * 20 13 12 32 32 H 1.08996 * 110.37604 * 217.07951 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 0.4611 -2.6311 -1.1828 11 6 0.3734 -2.6341 1.2727 12 6 0.2533 -4.1622 1.4517 13 7 1.3919 -4.7757 0.7439 14 6 2.1857 -5.6148 1.6515 15 6 1.3948 -6.8435 2.0203 16 6 1.3768 -8.0295 1.3727 17 6 0.5590 -8.9836 1.9383 18 7 -0.0974 -8.6372 3.0066 19 16 0.3190 -7.0294 3.3501 20 6 2.2187 -3.6985 0.1593 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2245 -1.9554 -1.2753 23 1 -0.6076 -2.1864 1.1133 24 1 0.8662 -2.1828 2.1338 25 1 -0.6842 -4.5134 1.0204 26 1 0.2948 -4.4159 2.5109 27 1 2.4224 -5.0508 2.5538 28 1 3.1098 -5.9126 1.1562 29 1 1.9599 -8.2158 0.4829 30 1 0.4645 -9.9715 1.5123 31 1 3.0362 -3.4400 0.8323 32 1 2.6077 -4.0033 -0.8122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:59 Heat of formation + Delta-G solvation = -2.393595 kcal Electronic energy + Delta-G solvation = -16714.548312 eV Core-core repulsion = 13994.772323 eV Total energy + Delta-G solvation = -2719.775989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96169 -38.17798 -34.99349 -32.17825 -32.04242 -29.32399 -28.19157 -26.33635 -24.40786 -23.22611 -20.62662 -19.66755 -19.26830 -17.68930 -17.02072 -15.60098 -15.38163 -14.93993 -14.84092 -14.12409 -13.72511 -13.50911 -13.28191 -12.69906 -12.55190 -12.11293 -11.63359 -11.52463 -11.29686 -11.10934 -10.89241 -10.74020 -10.48588 -10.43411 -10.30530 -9.90425 -9.49216 -9.20299 -8.65447 -8.61604 -8.12211 -7.76216 -6.24288 -4.33149 0.79154 1.58817 1.96864 2.56747 3.21316 3.26810 3.29234 4.25905 4.52849 4.70358 5.03490 5.13316 5.29002 5.37809 5.59042 5.67754 5.86170 5.94499 5.97191 6.01080 6.11977 6.39265 6.58744 6.65101 6.79821 7.00559 7.34635 7.44133 7.50787 7.58946 7.78068 8.11229 8.68934 9.35650 9.47923 10.82649 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049773 B = 0.005014 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.415034 B = 5583.044017 C = 5663.343940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.253 3.747 10 O -0.579 6.579 11 C -0.144 4.144 12 C 0.041 3.959 13 N -0.521 5.521 14 C 0.118 3.882 15 C -0.139 4.139 16 C -0.202 4.202 17 C 0.090 3.910 18 N -0.472 5.472 19 S 0.246 5.754 20 C 0.059 3.941 21 H 0.268 0.732 22 H 0.377 0.623 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.180 0.820 31 H 0.050 0.950 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -11.268 4.372 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.213 3.787 10 O -0.387 6.387 11 C -0.183 4.183 12 C -0.087 4.087 13 N -0.245 5.245 14 C -0.012 4.012 15 C -0.269 4.269 16 C -0.237 4.237 17 C -0.108 4.108 18 N -0.293 5.293 19 S 0.397 5.603 20 C -0.068 4.068 21 H 0.077 0.923 22 H 0.227 0.773 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.174 0.826 30 H 0.197 0.803 31 H 0.068 0.932 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.253 -11.750 5.702 13.121 hybrid contribution 1.327 1.459 -0.807 2.131 sum 2.580 -10.291 4.895 11.684 Atomic orbital electron populations 1.69723 1.05955 1.27590 1.50038 1.24993 0.94975 0.99418 0.93600 0.86532 0.79593 0.82383 0.78770 1.20023 1.21125 1.20171 1.21490 0.93504 0.90645 1.52077 0.92103 1.19507 0.86802 0.90473 0.81948 1.86142 1.51407 1.56706 1.44408 1.23275 1.02875 0.91541 1.00641 1.22932 0.94268 0.96493 0.94959 1.63675 1.08836 1.21689 1.30322 1.20692 0.94822 0.89450 0.96246 1.25504 1.01920 0.99679 0.99834 1.21283 1.05348 0.92617 1.04450 1.22806 0.93773 1.01643 0.92571 1.76750 1.25850 1.07069 1.19624 1.84096 1.36978 1.11133 1.28063 1.23034 0.95193 0.90120 0.98430 0.92257 0.77335 0.90256 0.92480 0.91524 0.94541 0.93214 0.88938 0.82632 0.80307 0.93192 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.49 10.75 55.43 0.60 -22.89 16 2 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.08 8.27 -34.44 -0.28 -14.36 16 8 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 9 C 0.25 6.13 0.87 -89.63 -0.08 6.05 16 10 O -0.58 -14.93 13.16 -35.23 -0.46 -15.40 16 11 C -0.14 -3.25 5.37 -24.90 -0.13 -3.39 16 12 C 0.04 0.80 6.37 -2.84 -0.02 0.78 16 13 N -0.52 -9.72 5.15 -232.69 -1.20 -10.92 16 14 C 0.12 1.77 5.12 -4.98 -0.03 1.74 16 15 C -0.14 -1.95 5.60 -35.41 -0.20 -2.15 16 16 C -0.20 -2.51 10.17 -40.84 -0.42 -2.93 16 17 C 0.09 1.07 11.27 -18.45 -0.21 0.86 16 18 N -0.47 -6.74 12.09 28.86 0.35 -6.39 16 19 S 0.25 3.47 22.66 -107.50 -2.44 1.03 16 20 C 0.06 1.23 5.86 -2.30 -0.01 1.21 16 21 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 22 H 0.38 9.81 7.56 45.56 0.34 10.16 16 23 H 0.08 1.91 7.54 -51.93 -0.39 1.52 16 24 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 27 H 0.05 0.73 7.96 -51.93 -0.41 0.31 16 28 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -27.88 280.58 -8.68 -36.56 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.26 Total: 8.95 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.47 Total: -10.39 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.25 Total: -40.21 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.46 Total: -15.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.44 Total: 1.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.88 -8.68 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.168 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds