Wall clock time and date at job start Sun Mar 29 2020 23:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99781 * 2 1 4 4 H 1.48499 * 109.47268 * 239.99744 * 3 2 1 5 5 H 1.48505 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47067 * 119.99733 * 3 2 1 7 7 C 1.37878 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99886 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.87768 * 62.38712 * 9 7 2 11 11 C 1.55147 * 110.98670 * 298.54550 * 9 7 2 12 12 C 1.54321 * 103.01469 * 206.25778 * 11 9 7 13 13 N 1.47439 * 107.23713 * 22.28151 * 12 11 9 14 14 C 1.46893 * 111.00357 * 123.25923 * 13 12 11 15 15 C 1.50706 * 109.47176 * 69.87223 * 14 13 12 16 16 C 1.35136 * 127.24618 * 89.70933 * 15 14 13 17 17 C 1.37810 * 114.76194 * 179.87126 * 16 15 14 18 18 N 1.30086 * 116.87578 * 0.44060 * 17 16 15 19 19 S 1.69600 * 107.15506 * 359.76616 * 18 17 16 20 20 C 1.47847 * 108.56732 * 0.99025 * 13 12 11 21 21 H 0.96992 * 120.00238 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99630 * 297.61567 * 10 9 7 23 23 H 1.08999 * 110.70703 * 87.87516 * 11 9 7 24 24 H 1.08998 * 110.85365 * 324.70181 * 11 9 7 25 25 H 1.09005 * 109.88495 * 262.87667 * 12 11 9 26 26 H 1.08998 * 109.89238 * 141.68972 * 12 11 9 27 27 H 1.09001 * 109.46739 * 309.87631 * 14 13 12 28 28 H 1.09000 * 109.47767 * 189.87890 * 14 13 12 29 29 H 1.08002 * 122.62005 * 0.03788 * 16 15 14 30 30 H 1.07993 * 121.56108 * 180.21118 * 17 16 15 31 31 H 1.08995 * 110.37157 * 94.73369 * 20 13 12 32 32 H 1.08996 * 110.37604 * 217.07951 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 0.4611 -2.6311 -1.1828 11 6 0.3734 -2.6341 1.2727 12 6 0.2533 -4.1622 1.4517 13 7 1.3919 -4.7757 0.7439 14 6 2.1857 -5.6148 1.6515 15 6 1.3948 -6.8435 2.0203 16 6 1.3768 -8.0295 1.3727 17 6 0.5590 -8.9836 1.9383 18 7 -0.0974 -8.6372 3.0066 19 16 0.3190 -7.0294 3.3501 20 6 2.2187 -3.6985 0.1593 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2245 -1.9554 -1.2753 23 1 -0.6076 -2.1864 1.1133 24 1 0.8662 -2.1828 2.1338 25 1 -0.6842 -4.5134 1.0204 26 1 0.2948 -4.4159 2.5109 27 1 2.4224 -5.0508 2.5538 28 1 3.1098 -5.9126 1.1562 29 1 1.9599 -8.2158 0.4829 30 1 0.4645 -9.9715 1.5123 31 1 3.0362 -3.4400 0.8323 32 1 2.6077 -4.0033 -0.8122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602698681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:59 Heat of formation + Delta-G solvation = -22.620104 kcal Electronic energy + Delta-G solvation = -16715.425400 eV Core-core repulsion = 13994.772323 eV Total energy + Delta-G solvation = -2720.653076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33392 -39.45522 -36.70963 -34.17269 -33.38707 -30.80172 -29.92021 -27.74746 -26.06270 -24.42986 -22.07712 -21.42642 -20.45365 -19.11314 -18.61117 -17.06131 -16.88001 -16.56614 -16.34975 -15.82529 -14.99052 -14.80614 -14.54963 -14.24126 -13.86821 -13.76966 -13.27067 -13.11104 -13.01896 -12.78361 -12.60938 -12.28658 -12.20259 -12.01696 -11.64302 -11.38706 -11.12247 -10.63444 -10.48257 -10.07271 -9.65300 -9.25183 -8.20605 -6.36737 -0.23505 0.55281 0.96311 1.42720 1.44260 1.51338 1.62185 2.39048 3.03527 3.15815 3.56679 3.97133 4.00125 4.11911 4.23030 4.37432 4.39331 4.49005 4.59166 4.72855 4.87929 5.02187 5.02478 5.06671 5.24862 5.46721 5.54799 5.69560 5.79146 5.89747 6.14279 6.20790 6.69356 7.35014 7.45125 8.84473 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049773 B = 0.005014 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.415034 B = 5583.044017 C = 5663.343940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.234 3.766 10 O -0.588 6.588 11 C -0.136 4.136 12 C 0.054 3.946 13 N -0.525 5.525 14 C 0.119 3.881 15 C -0.154 4.154 16 C -0.192 4.192 17 C 0.097 3.903 18 N -0.493 5.493 19 S 0.218 5.782 20 C 0.068 3.932 21 H 0.268 0.732 22 H 0.371 0.629 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.179 0.821 30 H 0.219 0.781 31 H 0.060 0.940 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -12.452 4.369 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.600 4.600 8 H 0.077 0.923 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.176 4.176 12 C -0.074 4.074 13 N -0.249 5.249 14 C -0.010 4.010 15 C -0.285 4.285 16 C -0.227 4.227 17 C -0.101 4.101 18 N -0.313 5.313 19 S 0.370 5.630 20 C -0.059 4.059 21 H 0.077 0.923 22 H 0.220 0.780 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.197 0.803 30 H 0.235 0.765 31 H 0.078 0.922 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.285 -12.946 5.715 14.335 hybrid contribution 1.005 1.743 -0.841 2.181 sum 3.290 -11.203 4.874 12.653 Atomic orbital electron populations 1.69822 1.06920 1.28168 1.50185 1.25685 0.95753 1.02264 0.93258 0.85611 0.78436 0.78804 0.78756 1.19918 1.20868 1.19597 1.21804 0.93659 0.91992 1.52556 0.92334 1.19791 0.87479 0.91515 0.81817 1.86134 1.51424 1.56468 1.45526 1.23082 1.01115 0.93752 0.99617 1.22750 0.94488 0.94031 0.96148 1.63590 1.08853 1.20920 1.31586 1.20739 0.95201 0.89172 0.95914 1.25439 1.02574 1.00029 1.00426 1.21629 1.04700 0.91862 1.04544 1.23405 0.92223 1.03004 0.91435 1.76822 1.26803 1.06806 1.20914 1.84134 1.37864 1.12050 1.28977 1.22873 0.94771 0.89401 0.98870 0.92266 0.78039 0.92564 0.93424 0.92404 0.92668 0.92809 0.86791 0.80330 0.76510 0.92159 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.45 10.75 21.45 0.23 -48.22 16 2 C 0.03 1.62 5.29 84.65 0.45 2.07 16 3 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.56 -29.44 8.27 25.60 0.21 -29.22 16 8 H 0.06 3.01 7.79 -2.91 -0.02 2.98 16 9 C 0.23 11.37 0.87 -10.15 -0.01 11.36 16 10 O -0.59 -30.75 13.16 -148.98 -1.96 -32.71 16 11 C -0.14 -6.23 5.37 31.78 0.17 -6.06 16 12 C 0.05 2.06 6.37 86.65 0.55 2.61 16 13 N -0.52 -18.82 5.15 -890.11 -4.58 -23.40 16 14 C 0.12 3.29 5.12 85.56 0.44 3.73 16 15 C -0.15 -3.99 5.60 24.97 0.14 -3.85 16 16 C -0.19 -4.15 10.17 21.45 0.22 -3.93 16 17 C 0.10 2.00 11.27 84.85 0.96 2.96 16 18 N -0.49 -13.10 12.09 -62.59 -0.76 -13.85 16 19 S 0.22 5.88 22.66 -56.49 -1.28 4.60 16 20 C 0.07 2.75 5.86 86.77 0.51 3.26 16 21 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 22 H 0.37 19.84 7.56 -74.06 -0.56 19.28 16 23 H 0.06 2.79 7.54 -2.39 -0.02 2.77 16 24 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 25 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.06 1.89 6.37 -2.39 -0.02 1.87 16 27 H 0.05 1.46 7.96 -2.39 -0.02 1.44 16 28 H 0.11 2.66 8.07 -2.39 -0.02 2.64 16 29 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 32 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -59.02 280.58 -2.12 -61.14 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.57 Total: 26.14 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 3.63 Total: -17.08 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -5.11 Total: -85.47 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.96 Total: -32.71 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.28 Total: 4.60 kcal Total: -59.02 -2.12 -61.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.517 kcal (2) G-P(sol) polarization free energy of solvation -59.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds