Wall clock time and date at job start Sun Mar 29 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30706 * 122.10917 * 2 1 4 4 C 1.30557 * 115.91135 * 180.02562 * 3 2 1 5 5 C 1.47258 * 125.54532 * 179.97438 * 4 3 2 6 6 O 1.21621 * 119.99569 * 7.02454 * 5 4 3 7 7 N 1.34767 * 119.99949 * 187.02514 * 5 4 3 8 8 C 1.46502 * 120.00251 * 5.98425 * 7 5 4 9 9 C 1.46502 * 119.99747 * 185.98445 * 7 5 4 10 10 C 1.50701 * 109.47367 * 270.00124 * 9 7 5 11 11 H 1.08008 * 119.99728 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00356 * 180.02562 * 10 9 7 13 13 N 1.31519 * 120.00144 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00182 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46897 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46887 * 119.99831 * 14 12 10 17 17 H 1.48497 * 109.47209 * 239.99428 * 14 12 10 18 18 S 1.76105 * 108.91310 * 0.26699 * 4 3 2 19 19 C 1.34231 * 122.11174 * 180.02562 * 2 1 3 20 20 C 1.50704 * 125.45518 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.46963 * 89.97957 * 1 2 3 22 22 H 1.09005 * 109.46593 * 209.97523 * 1 2 3 23 23 H 1.09000 * 109.47453 * 329.97410 * 1 2 3 24 24 H 1.08995 * 109.47032 * 275.97971 * 8 7 5 25 25 H 1.08993 * 109.47144 * 35.98217 * 8 7 5 26 26 H 1.09008 * 109.46775 * 155.98059 * 8 7 5 27 27 H 1.09000 * 109.47399 * 29.99879 * 9 7 5 28 28 H 1.08998 * 109.47214 * 150.00129 * 9 7 5 29 29 H 0.96992 * 120.00586 * 179.97438 * 13 12 10 30 30 H 1.08993 * 109.47098 * 89.99381 * 20 19 2 31 31 H 1.08996 * 109.47262 * 210.00078 * 20 19 2 32 32 H 1.09001 * 109.46435 * 329.99802 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9662 -0.0005 5 6 4.4801 2.0649 -0.0012 6 8 4.1049 3.2146 0.1276 7 7 5.7929 1.7964 -0.1444 8 6 6.2341 0.4290 -0.4304 9 6 6.7790 2.8721 -0.0142 10 6 7.0181 3.5004 -1.3629 11 1 6.4888 3.1347 -2.2305 12 6 7.9133 4.5413 -1.4896 13 7 8.5582 4.9863 -0.4333 14 14 8.2102 5.3196 -3.1616 15 1 7.3672 4.6425 -4.1795 16 1 7.8569 6.7610 -3.1064 17 1 9.6420 5.1746 -3.5279 18 16 3.8872 -0.7517 -0.0088 19 6 2.2205 -1.1370 -0.0005 20 6 1.6454 -2.5300 -0.0017 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5135 23 1 -0.3634 0.8897 0.5142 24 1 6.3128 -0.1298 0.5021 25 1 5.5106 -0.0568 -1.0850 26 1 7.2071 0.4562 -0.9210 27 1 6.4041 3.6270 0.6769 28 1 7.7146 2.4631 0.3671 29 1 9.1883 5.7183 -0.5225 30 1 1.5070 -2.8650 -1.0296 31 1 2.3291 -3.2058 0.5119 32 1 0.6839 -2.5264 0.5118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618341056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:09 Heat of formation + Delta-G solvation = 10.312408 kcal Electronic energy + Delta-G solvation = -16351.937088 eV Core-core repulsion = 13632.712073 eV Total energy + Delta-G solvation = -2719.225016 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01101 -38.68597 -35.00331 -33.28642 -32.60222 -29.87564 -28.43522 -26.58163 -25.71355 -24.60063 -22.59919 -19.84439 -18.35520 -17.87226 -16.62365 -16.53523 -15.43249 -15.33324 -14.55932 -14.33660 -13.95682 -13.40791 -13.19988 -13.05891 -12.81655 -12.72807 -12.50501 -12.27236 -12.08528 -12.07122 -11.33365 -10.94621 -10.75029 -10.52982 -10.22078 -9.89975 -9.68536 -9.26764 -9.09478 -8.47951 -8.46814 -7.82410 -6.08047 -4.12937 0.44649 1.33555 1.79452 2.58716 3.29597 3.36876 3.38861 3.47126 3.75499 4.40925 4.53232 4.79012 4.91795 5.01447 5.22533 5.27174 5.32070 5.35928 5.54710 5.64353 5.65741 5.70794 5.85782 6.01453 6.25446 6.87523 7.29365 7.37386 7.75681 7.88353 8.14363 8.18385 8.75614 8.93318 9.52316 11.00255 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.005249 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.800814 B = 5332.970952 C = 5569.337908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.047 3.953 3 N -0.404 5.404 4 C 0.016 3.984 5 C 0.578 3.422 6 O -0.496 6.496 7 N -0.589 5.589 8 C 0.066 3.934 9 C 0.248 3.752 10 C -0.529 4.529 11 H 0.060 0.940 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 S 0.186 5.814 19 C -0.272 4.272 20 C -0.072 4.072 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -17.176 1.119 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.120 5.120 4 C -0.261 4.261 5 C 0.360 3.640 6 O -0.370 6.370 7 N -0.322 5.322 8 C -0.079 4.079 9 C 0.130 3.870 10 C -0.567 4.567 11 H 0.078 0.922 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.727 3.273 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.209 1.209 18 S 0.443 5.557 19 C -0.394 4.394 20 C -0.130 4.130 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.211 -16.425 1.253 18.873 hybrid contribution -0.717 0.378 -0.951 1.250 sum -9.928 -16.047 0.301 18.872 Atomic orbital electron populations 1.20372 0.87580 1.03078 1.02722 1.20160 0.98516 0.85997 1.04283 1.66486 1.03783 1.30143 1.11573 1.27872 0.94294 0.95105 1.08876 1.16723 0.81538 0.86171 0.79595 1.90836 1.78209 1.19525 1.48450 1.48026 1.05622 1.10293 1.68297 1.21875 1.02111 0.83473 1.00487 1.19449 0.85280 0.84091 0.98194 1.21448 1.23837 1.17362 0.94095 0.92189 1.24923 0.95598 0.96331 0.97129 1.69932 1.27282 1.27257 1.28820 0.86412 0.77726 0.79359 0.83767 1.19757 1.20792 1.20920 1.84321 1.02120 1.04227 1.65034 1.25841 1.01047 1.01282 1.11216 1.20218 1.00900 0.89168 1.02752 0.90870 0.90940 0.90635 0.92489 0.92056 0.88323 0.93451 0.94147 0.92655 0.90603 0.91228 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.02 36.00 0.36 -0.50 16 2 C 0.05 0.70 6.68 -84.49 -0.56 0.13 16 3 N -0.40 -7.69 10.57 -7.69 -0.08 -7.77 16 4 C 0.02 0.30 7.20 -14.43 -0.10 0.19 16 5 C 0.58 13.22 7.65 -12.60 -0.10 13.12 16 6 O -0.50 -13.58 16.72 5.26 0.09 -13.50 16 7 N -0.59 -12.71 2.86 -184.30 -0.53 -13.24 16 8 C 0.07 1.04 8.84 59.85 0.53 1.57 16 9 C 0.25 6.40 5.09 -5.19 -0.03 6.37 16 10 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 11 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 14 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 S 0.19 2.47 18.03 -107.50 -1.94 0.53 16 19 C -0.27 -3.39 6.36 -35.72 -0.23 -3.62 16 20 C -0.07 -0.58 10.04 36.01 0.36 -0.22 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.59 6.60 -51.93 -0.34 0.25 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 25 H 0.06 0.87 5.13 -27.80 -0.14 0.73 16 26 H 0.10 1.49 8.03 -51.92 -0.42 1.08 16 27 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 28 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.52 6.65 -51.93 -0.35 0.18 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -34.12 287.22 -6.28 -40.40 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -3.68 Total: -5.57 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.19 Total: 3.51 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.13 Total: -46.51 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.94 Total: 0.53 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.12 -6.28 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618341056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.717 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds