Wall clock time and date at job start Sun Mar 29 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30706 * 122.10917 * 2 1 4 4 C 1.30557 * 115.91135 * 180.02562 * 3 2 1 5 5 C 1.47258 * 125.54532 * 179.97438 * 4 3 2 6 6 O 1.21621 * 119.99569 * 7.02454 * 5 4 3 7 7 N 1.34767 * 119.99949 * 187.02514 * 5 4 3 8 8 C 1.46502 * 120.00251 * 5.98425 * 7 5 4 9 9 C 1.46502 * 119.99747 * 185.98445 * 7 5 4 10 10 C 1.50701 * 109.47367 * 270.00124 * 9 7 5 11 11 H 1.08008 * 119.99728 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00356 * 180.02562 * 10 9 7 13 13 N 1.31519 * 120.00144 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00182 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46897 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46887 * 119.99831 * 14 12 10 17 17 H 1.48497 * 109.47209 * 239.99428 * 14 12 10 18 18 S 1.76105 * 108.91310 * 0.26699 * 4 3 2 19 19 C 1.34231 * 122.11174 * 180.02562 * 2 1 3 20 20 C 1.50704 * 125.45518 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.46963 * 89.97957 * 1 2 3 22 22 H 1.09005 * 109.46593 * 209.97523 * 1 2 3 23 23 H 1.09000 * 109.47453 * 329.97410 * 1 2 3 24 24 H 1.08995 * 109.47032 * 275.97971 * 8 7 5 25 25 H 1.08993 * 109.47144 * 35.98217 * 8 7 5 26 26 H 1.09008 * 109.46775 * 155.98059 * 8 7 5 27 27 H 1.09000 * 109.47399 * 29.99879 * 9 7 5 28 28 H 1.08998 * 109.47214 * 150.00129 * 9 7 5 29 29 H 0.96992 * 120.00586 * 179.97438 * 13 12 10 30 30 H 1.08993 * 109.47098 * 89.99381 * 20 19 2 31 31 H 1.08996 * 109.47262 * 210.00078 * 20 19 2 32 32 H 1.09001 * 109.46435 * 329.99802 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9662 -0.0005 5 6 4.4801 2.0649 -0.0012 6 8 4.1049 3.2146 0.1276 7 7 5.7929 1.7964 -0.1444 8 6 6.2341 0.4290 -0.4304 9 6 6.7790 2.8721 -0.0142 10 6 7.0181 3.5004 -1.3629 11 1 6.4888 3.1347 -2.2305 12 6 7.9133 4.5413 -1.4896 13 7 8.5582 4.9863 -0.4333 14 14 8.2102 5.3196 -3.1616 15 1 7.3672 4.6425 -4.1795 16 1 7.8569 6.7610 -3.1064 17 1 9.6420 5.1746 -3.5279 18 16 3.8872 -0.7517 -0.0088 19 6 2.2205 -1.1370 -0.0005 20 6 1.6454 -2.5300 -0.0017 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5135 23 1 -0.3634 0.8897 0.5142 24 1 6.3128 -0.1298 0.5021 25 1 5.5106 -0.0568 -1.0850 26 1 7.2071 0.4562 -0.9210 27 1 6.4041 3.6270 0.6769 28 1 7.7146 2.4631 0.3671 29 1 9.1883 5.7183 -0.5225 30 1 1.5070 -2.8650 -1.0296 31 1 2.3291 -3.2058 0.5119 32 1 0.6839 -2.5264 0.5118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618341056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:09 Heat of formation + Delta-G solvation = -14.546577 kcal Electronic energy + Delta-G solvation = -16353.015055 eV Core-core repulsion = 13632.712073 eV Total energy + Delta-G solvation = -2720.302982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.32101 -40.26508 -36.80561 -34.87682 -34.15821 -30.81813 -30.24871 -27.98788 -27.16541 -25.84641 -24.36941 -21.29952 -19.57739 -19.21169 -18.73830 -17.99067 -17.13509 -16.78859 -16.32507 -15.68265 -15.29861 -14.68637 -14.41727 -14.15639 -14.03066 -14.00445 -13.74980 -13.67348 -13.31893 -13.29890 -12.91460 -12.81604 -12.62652 -12.26787 -11.74732 -11.69643 -11.39109 -10.66002 -10.61128 -10.38294 -9.63962 -9.55442 -8.24808 -6.38895 -0.77696 0.13753 0.68328 1.30530 1.36628 1.39861 1.51130 1.88530 2.20058 2.38960 3.05536 3.24677 3.74620 3.95688 4.06582 4.08061 4.43356 4.58004 4.68630 4.74710 4.79597 4.82140 4.90869 4.98252 5.07350 5.15016 5.38044 5.43871 5.72660 6.00535 6.35463 6.67551 6.71373 7.09615 7.32328 8.83046 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.005249 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.800814 B = 5332.970952 C = 5569.337908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 N -0.439 5.439 4 C -0.055 4.055 5 C 0.572 3.428 6 O -0.568 6.568 7 N -0.593 5.593 8 C 0.059 3.941 9 C 0.262 3.738 10 C -0.546 4.546 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.264 1.264 18 S 0.279 5.721 19 C -0.246 4.246 20 C -0.076 4.076 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.002 0.998 28 H 0.045 0.955 29 H 0.269 0.731 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 -20.885 0.138 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 N -0.157 5.157 4 C -0.328 4.328 5 C 0.357 3.643 6 O -0.447 6.447 7 N -0.325 5.325 8 C -0.084 4.084 9 C 0.141 3.859 10 C -0.584 4.584 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.189 1.189 18 S 0.535 5.465 19 C -0.368 4.368 20 C -0.135 4.135 21 H 0.101 0.899 22 H 0.125 0.875 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.020 0.980 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.780 -20.184 0.267 22.430 hybrid contribution -0.617 1.311 -0.602 1.569 sum -10.397 -18.873 -0.335 21.550 Atomic orbital electron populations 1.20492 0.85193 1.04107 1.03693 1.20710 1.00188 0.85653 1.05594 1.66442 1.04534 1.33239 1.11449 1.26902 0.93773 0.97488 1.14662 1.17315 0.82289 0.86688 0.78048 1.90759 1.79551 1.22766 1.51646 1.47957 1.04920 1.11671 1.67965 1.22213 1.02846 0.80670 1.02680 1.18967 0.85961 0.84615 0.96330 1.21679 1.23949 1.18192 0.94618 0.93071 1.25798 0.95237 0.96663 1.01032 1.70033 1.27765 1.27763 1.30893 0.85372 0.78462 0.77941 0.79046 1.19488 1.20872 1.18907 1.83700 1.02106 0.98265 1.62435 1.26593 1.00644 1.02965 1.06617 1.20528 1.02186 0.86124 1.04662 0.89896 0.87513 0.92027 0.89174 0.90244 0.87660 0.97980 0.93746 0.92220 0.88466 0.89171 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.02 71.23 0.71 -0.78 16 2 C 0.02 0.42 6.68 41.81 0.28 0.70 16 3 N -0.44 -17.00 10.57 -178.24 -1.88 -18.88 16 4 C -0.06 -2.13 7.20 87.26 0.63 -1.50 16 5 C 0.57 27.69 7.65 86.62 0.66 28.35 16 6 O -0.57 -33.81 16.72 -4.10 -0.07 -33.87 16 7 N -0.59 -26.55 2.86 -855.25 -2.44 -29.00 16 8 C 0.06 1.79 8.84 127.77 1.13 2.92 16 9 C 0.26 14.21 5.09 85.63 0.44 14.65 16 10 C -0.55 -31.87 9.39 25.60 0.24 -31.63 16 11 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.70 5.46 84.65 0.46 1.16 16 13 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 14 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 S 0.28 6.55 18.03 -56.49 -1.02 5.54 16 19 C -0.25 -5.17 6.36 24.77 0.16 -5.01 16 20 C -0.08 -0.79 10.04 71.24 0.72 -0.07 16 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.11 1.29 6.60 -2.38 -0.02 1.27 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 2.12 7.51 -2.39 -0.02 2.10 16 25 H 0.08 2.08 5.13 -17.73 -0.09 1.99 16 26 H 0.10 3.05 8.03 -2.38 -0.02 3.03 16 27 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 28 H 0.04 2.34 8.07 -2.39 -0.02 2.32 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.71 6.65 -2.39 -0.02 0.70 16 Total: -1.00 -80.95 287.22 3.37 -77.58 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: 1.05 Total: -2.15 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.42 Total: 8.78 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.04 Total: -103.26 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.07 Total: -33.87 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.02 Total: 5.54 kcal Total: -80.95 3.37 -77.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618341056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.035 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds