Wall clock time and date at job start Sun Mar 29 2020 23:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50698 * 109.46976 * 239.99738 * 2 1 3 5 5 O 1.20825 * 119.99963 * 239.99632 * 4 2 1 6 6 O 1.34225 * 119.99990 * 60.00192 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47038 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00496 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00456 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99511 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46813 * 90.00014 * 13 11 9 15 15 H 1.48500 * 109.46961 * 209.99816 * 13 11 9 16 16 H 1.48499 * 109.47186 * 330.00168 * 13 11 9 17 17 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 18 18 C 1.38426 * 122.53845 * 239.99761 * 17 2 1 19 19 C 1.33380 * 114.92014 * 179.97438 * 18 17 2 20 20 S 1.75890 * 109.59447 * 0.02562 * 19 18 17 21 21 C 1.33389 * 122.54073 * 59.71263 * 17 2 1 22 22 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47081 * 299.99665 * 7 6 4 26 26 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 27 27 H 1.08998 * 109.47413 * 299.99806 * 8 7 6 28 28 H 1.09004 * 109.47423 * 59.99595 * 8 7 6 29 29 H 0.97003 * 120.00375 * 180.02562 * 12 11 9 30 30 H 1.08005 * 122.53554 * 359.96386 * 18 17 2 31 31 H 1.08002 * 125.20639 * 179.97438 * 19 18 17 32 32 H 1.08001 * 125.19982 * 0.02562 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2277 -0.9859 -3.5896 8 6 1.7555 -0.3194 -4.8834 9 6 2.2953 -1.0808 -6.0665 10 1 2.9136 -1.9525 -5.9113 11 6 1.9998 -0.6645 -7.3474 12 7 2.4704 -1.3292 -8.3799 13 14 0.9297 0.8429 -7.6159 14 1 1.7878 2.0528 -7.6870 15 1 0.1763 0.6950 -8.8870 16 1 -0.0256 0.9793 -6.4872 17 6 2.0323 -0.7104 1.2306 18 6 2.8306 -0.0889 2.1753 19 6 3.1875 -0.8592 3.2040 20 16 2.4981 -2.4652 3.0053 21 6 1.7368 -1.9840 1.4947 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.3171 -0.9847 -3.5565 26 1 1.8643 -2.0129 -3.5568 27 1 0.6661 -0.3209 -4.9163 28 1 2.1186 0.7078 -4.9164 29 1 2.2628 -1.0361 -9.2810 30 1 3.1412 0.9417 2.0861 31 1 3.8059 -0.5453 4.0320 32 1 1.1255 -2.6228 0.8744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738833405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:04 Heat of formation + Delta-G solvation = -65.335812 kcal Electronic energy + Delta-G solvation = -15996.057952 eV Core-core repulsion = 13241.259832 eV Total energy + Delta-G solvation = -2754.798120 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38666 -38.29891 -36.04997 -33.53686 -33.11362 -30.71488 -28.93727 -25.82443 -25.14817 -23.27686 -20.85057 -20.46583 -18.72017 -17.97476 -17.29890 -16.59075 -16.15498 -15.90886 -14.91442 -14.23567 -14.13862 -13.45710 -13.32271 -13.12968 -12.88161 -12.61037 -12.50106 -12.14509 -11.82861 -11.65362 -11.39159 -11.26212 -10.84781 -10.69197 -10.50381 -9.96671 -9.84497 -9.70059 -9.35475 -8.88840 -8.63240 -8.52767 -6.13673 -4.14958 0.90623 1.54088 1.85722 2.45013 2.52449 3.26189 3.27333 3.34655 3.38721 4.37766 4.53286 4.73728 4.96463 5.05275 5.15213 5.19860 5.27277 5.48850 5.61794 5.65173 5.89969 5.96559 5.97442 6.00397 6.22530 6.33877 6.45078 6.80530 7.19055 7.21542 7.61790 8.15372 8.39020 8.88047 9.45820 10.98929 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.003932 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.123947 B = 7119.396205 C = 7410.115580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 H 0.114 0.886 4 C 0.458 3.542 5 O -0.506 6.506 6 O -0.359 6.359 7 C 0.083 3.917 8 C -0.009 4.009 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.882 3.118 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.218 4.218 20 S 0.094 5.906 21 C -0.172 4.172 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.266 0.734 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 3.493 23.205 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.132 0.868 4 C 0.300 3.700 5 O -0.394 6.394 6 O -0.276 6.276 7 C 0.010 3.990 8 C -0.046 4.046 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.708 3.292 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.353 4.353 20 S 0.358 5.642 21 C -0.308 4.308 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.978 1.818 23.850 24.104 hybrid contribution -0.293 1.857 -1.222 2.243 sum -3.271 3.675 22.628 23.156 Atomic orbital electron populations 1.21785 0.91218 1.03163 1.03557 1.19613 0.98100 0.99868 0.86944 0.86765 1.23373 0.78001 0.83160 0.85511 1.90654 1.35328 1.25864 1.87527 1.86472 1.69572 1.56434 1.15088 1.23374 0.98480 0.95232 0.81917 1.19618 0.97646 0.96924 0.90441 1.20849 1.32987 1.13942 0.88821 0.90686 1.24940 0.95460 0.96859 0.95753 1.69893 1.45047 1.40010 0.98564 0.86745 0.81218 0.83304 0.77903 1.20047 1.21168 1.18744 1.18386 1.01481 0.94288 0.96942 1.20018 0.99745 1.01430 0.94050 1.25494 1.08569 0.96775 1.04502 1.84217 1.47409 1.13124 1.19486 1.25415 1.06169 0.99011 1.00196 0.91068 0.90439 0.92040 0.91778 0.91771 0.95386 0.95824 0.92423 0.84114 0.81871 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.02 -0.28 3.08 -92.92 -0.29 -0.57 16 3 H 0.11 1.15 8.03 -51.93 -0.42 0.73 16 4 C 0.46 7.66 7.16 36.00 0.26 7.92 16 5 O -0.51 -9.85 14.99 -18.75 -0.28 -10.13 16 6 O -0.36 -6.72 10.12 -39.24 -0.40 -7.12 16 7 C 0.08 1.77 5.40 37.16 0.20 1.97 16 8 C -0.01 -0.21 4.42 -27.89 -0.12 -0.34 16 9 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 10 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 13 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 17 C -0.10 -1.19 4.28 -106.24 -0.45 -1.64 16 18 C -0.12 -1.26 9.92 -41.21 -0.41 -1.67 16 19 C -0.22 -2.08 11.23 29.03 0.33 -1.75 16 20 S 0.09 0.96 23.34 -107.50 -2.51 -1.54 16 21 C -0.17 -2.08 9.27 29.04 0.27 -1.82 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 24 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 25 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 26 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 27 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 28 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.16 1.94 7.93 -52.49 -0.42 1.53 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -31.93 292.88 -7.11 -39.04 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.12 Total: -2.34 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.32 Total: -12.37 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.68 Total: -17.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.93 -7.11 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738833405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.293 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds