Wall clock time and date at job start Sun Mar 29 2020 23:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50698 * 109.46976 * 239.99738 * 2 1 3 5 5 O 1.20825 * 119.99963 * 239.99632 * 4 2 1 6 6 O 1.34225 * 119.99990 * 60.00192 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47038 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47203 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00496 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00456 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99511 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46813 * 90.00014 * 13 11 9 15 15 H 1.48500 * 109.46961 * 209.99816 * 13 11 9 16 16 H 1.48499 * 109.47186 * 330.00168 * 13 11 9 17 17 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 18 18 C 1.38426 * 122.53845 * 239.99761 * 17 2 1 19 19 C 1.33380 * 114.92014 * 179.97438 * 18 17 2 20 20 S 1.75890 * 109.59447 * 0.02562 * 19 18 17 21 21 C 1.33389 * 122.54073 * 59.71263 * 17 2 1 22 22 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47081 * 299.99665 * 7 6 4 26 26 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 27 27 H 1.08998 * 109.47413 * 299.99806 * 8 7 6 28 28 H 1.09004 * 109.47423 * 59.99595 * 8 7 6 29 29 H 0.97003 * 120.00375 * 180.02562 * 12 11 9 30 30 H 1.08005 * 122.53554 * 359.96386 * 18 17 2 31 31 H 1.08002 * 125.20639 * 179.97438 * 19 18 17 32 32 H 1.08001 * 125.19982 * 0.02562 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2277 -0.9859 -3.5896 8 6 1.7555 -0.3194 -4.8834 9 6 2.2953 -1.0808 -6.0665 10 1 2.9136 -1.9525 -5.9113 11 6 1.9998 -0.6645 -7.3474 12 7 2.4704 -1.3292 -8.3799 13 14 0.9297 0.8429 -7.6159 14 1 1.7878 2.0528 -7.6870 15 1 0.1763 0.6950 -8.8870 16 1 -0.0256 0.9793 -6.4872 17 6 2.0323 -0.7104 1.2306 18 6 2.8306 -0.0889 2.1753 19 6 3.1875 -0.8592 3.2040 20 16 2.4981 -2.4652 3.0053 21 6 1.7368 -1.9840 1.4947 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.3171 -0.9847 -3.5565 26 1 1.8643 -2.0129 -3.5568 27 1 0.6661 -0.3209 -4.9163 28 1 2.1186 0.7078 -4.9164 29 1 2.2628 -1.0361 -9.2810 30 1 3.1412 0.9417 2.0861 31 1 3.8059 -0.5453 4.0320 32 1 1.1255 -2.6228 0.8744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738833405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:04 Heat of formation + Delta-G solvation = -83.799696 kcal Electronic energy + Delta-G solvation = -15996.858606 eV Core-core repulsion = 13241.259832 eV Total energy + Delta-G solvation = -2755.598774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.71384 -39.30610 -37.52511 -35.42031 -34.26766 -32.68528 -29.77474 -27.44372 -26.30626 -24.44060 -22.65030 -21.76005 -19.63203 -19.21334 -18.79696 -18.10662 -17.61045 -17.28748 -16.29785 -15.87312 -15.39675 -14.92025 -14.57122 -14.38863 -14.06332 -13.71864 -13.41740 -13.32457 -13.25406 -13.00708 -12.64642 -12.49876 -12.44320 -12.32575 -11.81023 -11.63857 -11.56022 -11.43474 -11.28101 -10.81712 -9.69934 -9.34503 -8.34935 -6.43606 0.08293 0.73749 1.06806 1.18656 1.38600 1.40458 1.47574 1.53379 2.04975 2.34513 3.00000 3.57172 3.75627 4.02956 4.15247 4.17788 4.21786 4.24862 4.49902 4.61454 4.69313 4.83596 4.88689 5.03358 5.12529 5.24159 5.28452 5.41992 5.50093 5.52040 5.59013 6.14757 6.62549 6.73767 7.21687 8.81302 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.003932 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.123947 B = 7119.396205 C = 7410.115580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.016 4.016 3 H 0.142 0.858 4 C 0.455 3.545 5 O -0.538 6.538 6 O -0.356 6.356 7 C 0.094 3.906 8 C -0.002 4.002 9 C -0.545 4.545 10 H 0.032 0.968 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.956 3.044 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.242 1.242 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.211 4.211 20 S 0.099 5.901 21 C -0.199 4.199 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.271 0.729 30 H 0.165 0.835 31 H 0.192 0.808 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 5.978 25.051 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 H 0.160 0.840 4 C 0.299 3.701 5 O -0.427 6.427 6 O -0.273 6.273 7 C 0.020 3.980 8 C -0.040 4.040 9 C -0.583 4.583 10 H 0.051 0.949 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.778 3.222 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.165 1.165 17 C -0.120 4.120 18 C -0.165 4.165 19 C -0.346 4.346 20 S 0.363 5.637 21 C -0.335 4.335 22 H 0.116 0.884 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.183 0.817 31 H 0.209 0.791 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.982 4.300 25.731 26.390 hybrid contribution 0.100 0.970 -1.716 1.974 sum -3.882 5.270 24.015 24.891 Atomic orbital electron populations 1.21808 0.89588 1.03154 1.04828 1.19783 0.99307 1.00407 0.84195 0.84023 1.24454 0.77058 0.82886 0.85729 1.90646 1.36879 1.27464 1.87711 1.86464 1.69567 1.55976 1.15268 1.22912 0.97763 0.94743 0.82565 1.19451 0.97819 0.96834 0.89849 1.21130 1.32753 1.13309 0.91072 0.94921 1.25983 0.96951 1.00597 0.95155 1.70045 1.46812 1.42296 0.99333 0.85577 0.79467 0.78628 0.78533 1.18705 1.20635 1.16525 1.18573 1.01885 0.94345 0.97164 1.20263 0.99660 1.02727 0.93815 1.25897 1.07902 0.95811 1.04971 1.84187 1.47148 1.14043 1.18366 1.25512 1.07142 0.99506 1.01333 0.88401 0.90485 0.92771 0.92789 0.92780 0.94483 0.94617 0.92030 0.81744 0.79084 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.95 71.98 0.64 -1.79 16 2 C -0.02 -0.34 3.08 -12.28 -0.04 -0.38 16 3 H 0.14 2.35 8.03 -2.39 -0.02 2.33 16 4 C 0.45 14.83 7.16 71.24 0.51 15.34 16 5 O -0.54 -21.09 14.99 21.97 0.33 -20.76 16 6 O -0.36 -12.95 10.12 -51.37 -0.52 -13.47 16 7 C 0.09 4.05 5.40 71.98 0.39 4.44 16 8 C 0.00 -0.10 4.42 29.85 0.13 0.03 16 9 C -0.54 -31.74 9.66 25.60 0.25 -31.49 16 10 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 11 C 0.01 0.64 5.47 84.66 0.46 1.11 16 12 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 13 Si 0.96 43.16 27.47 68.60 1.88 45.04 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 17 C -0.11 -2.37 4.28 -20.92 -0.09 -2.46 16 18 C -0.13 -2.41 9.92 21.21 0.21 -2.20 16 19 C -0.21 -3.44 11.23 66.72 0.75 -2.69 16 20 S 0.10 1.90 23.34 -56.49 -1.32 0.58 16 21 C -0.20 -4.70 9.27 66.72 0.62 -4.08 16 22 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.39 8.11 -2.39 -0.02 1.37 16 24 H 0.05 1.04 7.73 -2.38 -0.02 1.02 16 25 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 26 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 27 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 28 H 0.04 1.61 7.57 -2.38 -0.02 1.60 16 29 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 3.75 7.93 -2.91 -0.02 3.73 16 Total: -1.00 -70.04 292.88 5.56 -64.48 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.05 Total: 6.98 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.84 Total: -24.17 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.30 Total: -58.68 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.19 Total: -34.23 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -70.04 5.56 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738833405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.318 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds