Wall clock time and date at job start Sun Mar 29 2020 23:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48492 * 109.47044 * 239.99512 * 3 2 1 5 5 H 1.48494 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47282 * 119.99716 * 3 2 1 7 7 C 1.37879 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00191 * 175.48092 * 7 2 1 9 9 C 1.50696 * 120.00147 * 355.75467 * 7 2 1 10 10 C 1.53004 * 115.54952 * 35.31788 * 9 7 2 11 11 O 1.42902 * 109.46852 * 54.24407 * 10 9 7 12 12 C 1.34945 * 116.99827 * 184.93865 * 11 10 9 13 13 O 1.21671 * 119.99970 * 5.02688 * 12 11 10 14 14 C 1.46170 * 119.99652 * 185.03203 * 12 11 10 15 15 C 1.34105 * 119.24453 * 4.76564 * 14 12 11 16 16 O 1.34951 * 121.67515 * 180.12040 * 15 14 12 17 17 C 1.43239 * 116.83760 * 343.29995 * 16 15 14 18 18 C 1.53554 * 108.09442 * 45.28397 * 17 16 15 19 19 O 1.36222 * 119.23666 * 185.03461 * 14 12 11 20 20 C 1.53001 * 117.50238 * 249.64605 * 9 7 2 21 21 C 1.53001 * 117.50138 * 180.98531 * 9 7 2 22 22 H 0.96998 * 120.00359 * 5.00001 * 1 2 3 23 23 H 1.08999 * 109.47398 * 174.24166 * 10 9 7 24 24 H 1.09003 * 109.47050 * 294.24385 * 10 9 7 25 25 H 1.07999 * 119.15973 * 0.36621 * 15 14 12 26 26 H 1.08997 * 109.74177 * 285.63689 * 17 16 15 27 27 H 1.08995 * 109.74303 * 164.93206 * 17 16 15 28 28 H 1.09001 * 109.75528 * 182.18787 * 18 17 16 29 29 H 1.09007 * 109.75022 * 61.44439 * 18 17 16 30 30 H 1.09000 * 117.49926 * 0.02562 * 20 9 7 31 31 H 1.09001 * 117.49805 * 145.01716 * 20 9 7 32 32 H 1.08993 * 117.50317 * 214.98066 * 21 9 7 33 33 H 1.08997 * 117.49530 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1956 -0.0732 9 6 1.2541 -2.4973 0.0977 10 6 -0.0998 -2.5339 -0.6141 11 8 0.0697 -2.1496 -1.9800 12 6 -1.0484 -2.0302 -2.7261 13 8 -2.1419 -2.1570 -2.2079 14 6 -0.9456 -1.7486 -4.1567 15 6 0.2655 -1.7072 -4.7310 16 8 0.4174 -1.4493 -6.0469 17 6 -0.7463 -1.5849 -6.8710 18 6 -1.9206 -0.9032 -6.1539 19 8 -2.0821 -1.5288 -4.8748 20 6 1.3921 -3.2970 1.3948 21 6 2.0773 -3.7869 0.1166 22 1 -0.4850 0.8368 -0.0732 23 1 -0.5070 -3.5440 -0.5688 24 1 -0.7864 -1.8431 -0.1247 25 1 1.1414 -1.8888 -4.1257 26 1 -0.9699 -2.6411 -7.0213 27 1 -0.5738 -1.1040 -7.8338 28 1 -2.8310 -1.0242 -6.7409 29 1 -1.7055 0.1571 -6.0209 30 1 2.0253 -2.8803 2.1780 31 1 0.5184 -3.8494 1.7408 32 1 1.6543 -4.6613 -0.3776 33 1 3.1616 -3.6926 0.0584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:57 Heat of formation + Delta-G solvation = -105.962703 kcal Electronic energy + Delta-G solvation = -19232.552230 eV Core-core repulsion = 16033.239525 eV Total energy + Delta-G solvation = -3199.312705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88719 -39.21244 -37.07625 -36.52000 -34.91229 -32.19265 -32.04148 -29.03525 -26.39913 -25.44785 -25.09088 -21.91236 -21.22362 -19.46486 -19.17086 -18.22556 -17.68080 -16.51953 -16.39822 -15.65996 -15.28657 -14.78470 -14.72260 -14.46261 -14.12576 -13.77806 -13.56676 -13.02143 -12.30088 -12.11010 -11.79344 -11.53655 -10.99858 -10.96942 -10.81693 -10.57649 -10.49683 -10.34041 -9.90475 -9.52404 -9.25609 -8.98678 -8.76174 -8.24681 -8.03761 -5.97084 -4.11894 1.57906 2.75311 3.21510 3.28846 3.34785 3.36323 3.67527 4.20494 4.28422 4.36450 4.78047 4.88120 4.97309 5.16089 5.26211 5.42573 5.46891 5.66353 6.05860 6.15487 6.23791 6.49176 6.61457 6.63928 6.79061 6.90949 6.97839 7.23963 7.44919 7.49858 7.63565 7.92741 8.32664 8.73114 8.87681 9.50481 10.96969 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.007373 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.705891 B = 3796.480620 C = 4342.813967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.046 3.954 10 C 0.118 3.882 11 O -0.310 6.310 12 C 0.519 3.481 13 O -0.508 6.508 14 C -0.063 4.063 15 C 0.037 3.963 16 O -0.302 6.302 17 C 0.012 3.988 18 C 0.020 3.980 19 O -0.289 6.289 20 C -0.195 4.195 21 C -0.209 4.209 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.119 0.881 25 H 0.200 0.800 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -2.536 -11.808 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.045 3.955 10 C 0.045 3.955 11 O -0.225 6.225 12 C 0.362 3.638 13 O -0.398 6.398 14 C -0.109 4.109 15 C -0.028 4.028 16 O -0.215 6.215 17 C -0.063 4.063 18 C -0.056 4.056 19 O -0.204 6.204 20 C -0.233 4.233 21 C -0.246 4.246 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.137 0.863 25 H 0.216 0.784 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.470 -2.409 -11.590 11.928 hybrid contribution 0.228 0.879 -0.049 0.909 sum -1.242 -1.530 -11.639 11.805 Atomic orbital electron populations 1.69747 1.05893 1.26946 1.49308 1.24975 0.94856 0.99224 0.93969 0.86559 0.79504 0.82686 0.78715 1.20093 1.21245 1.20142 1.20411 0.92720 0.88361 1.50500 0.91954 1.18931 0.92121 0.90624 0.93774 1.22532 0.99776 0.96441 0.76795 1.86050 1.32334 1.78476 1.25608 1.19648 0.83702 0.75008 0.85398 1.90815 1.28724 1.46960 1.73334 1.19389 0.86357 1.14252 0.90917 1.23664 0.98328 0.97565 0.83273 1.86101 1.35040 1.83434 1.16877 1.23700 0.85839 1.02272 0.94500 1.23631 1.00524 0.97350 0.84136 1.86383 1.27620 1.76777 1.29658 1.22989 1.01767 1.06130 0.92431 1.22958 0.98737 0.99920 1.03015 0.92581 0.96293 0.86316 0.78397 0.90175 0.86343 0.86264 0.90544 0.89790 0.91381 0.91228 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 10.15 55.43 0.56 -24.01 16 2 C 0.07 1.95 5.34 -17.82 -0.10 1.85 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.48 -12.88 8.78 -34.44 -0.30 -13.18 16 8 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 9 C 0.05 1.14 2.20 -155.66 -0.34 0.79 16 10 C 0.12 2.94 4.37 37.16 0.16 3.10 16 11 O -0.31 -7.44 8.61 -41.16 -0.35 -7.80 16 12 C 0.52 11.98 7.83 33.91 0.27 12.25 16 13 O -0.51 -13.10 16.60 -24.93 -0.41 -13.52 16 14 C -0.06 -1.20 6.61 -37.85 -0.25 -1.45 16 15 C 0.04 0.61 10.62 29.28 0.31 0.92 16 16 O -0.30 -4.23 10.47 -30.66 -0.32 -4.55 16 17 C 0.01 0.13 7.30 37.44 0.27 0.40 16 18 C 0.02 0.23 7.31 37.44 0.27 0.50 16 19 O -0.29 -5.11 10.28 -45.78 -0.47 -5.58 16 20 C -0.20 -4.30 9.96 -26.69 -0.27 -4.56 16 21 C -0.21 -4.45 9.92 -26.69 -0.26 -4.72 16 22 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 23 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 24 H 0.12 3.30 5.74 -51.93 -0.30 3.01 16 25 H 0.20 3.21 7.34 -52.49 -0.39 2.83 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -31.47 289.65 -5.92 -37.39 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.03 Total: 1.93 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.24 Total: -4.11 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.56 Total: -24.01 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.56 Total: -31.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.47 -5.92 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.572 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds