Wall clock time and date at job start Sun Mar 29 2020 23:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48492 * 109.47044 * 239.99512 * 3 2 1 5 5 H 1.48494 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47282 * 119.99716 * 3 2 1 7 7 C 1.37879 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00191 * 175.48092 * 7 2 1 9 9 C 1.50696 * 120.00147 * 355.75467 * 7 2 1 10 10 C 1.53004 * 115.54952 * 35.31788 * 9 7 2 11 11 O 1.42902 * 109.46852 * 54.24407 * 10 9 7 12 12 C 1.34945 * 116.99827 * 184.93865 * 11 10 9 13 13 O 1.21671 * 119.99970 * 5.02688 * 12 11 10 14 14 C 1.46170 * 119.99652 * 185.03203 * 12 11 10 15 15 C 1.34105 * 119.24453 * 4.76564 * 14 12 11 16 16 O 1.34951 * 121.67515 * 180.12040 * 15 14 12 17 17 C 1.43239 * 116.83760 * 343.29995 * 16 15 14 18 18 C 1.53554 * 108.09442 * 45.28397 * 17 16 15 19 19 O 1.36222 * 119.23666 * 185.03461 * 14 12 11 20 20 C 1.53001 * 117.50238 * 249.64605 * 9 7 2 21 21 C 1.53001 * 117.50138 * 180.98531 * 9 7 2 22 22 H 0.96998 * 120.00359 * 5.00001 * 1 2 3 23 23 H 1.08999 * 109.47398 * 174.24166 * 10 9 7 24 24 H 1.09003 * 109.47050 * 294.24385 * 10 9 7 25 25 H 1.07999 * 119.15973 * 0.36621 * 15 14 12 26 26 H 1.08997 * 109.74177 * 285.63689 * 17 16 15 27 27 H 1.08995 * 109.74303 * 164.93206 * 17 16 15 28 28 H 1.09001 * 109.75528 * 182.18787 * 18 17 16 29 29 H 1.09007 * 109.75022 * 61.44439 * 18 17 16 30 30 H 1.09000 * 117.49926 * 0.02562 * 20 9 7 31 31 H 1.09001 * 117.49805 * 145.01716 * 20 9 7 32 32 H 1.08993 * 117.50317 * 214.98066 * 21 9 7 33 33 H 1.08997 * 117.49530 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1956 -0.0732 9 6 1.2541 -2.4973 0.0977 10 6 -0.0998 -2.5339 -0.6141 11 8 0.0697 -2.1496 -1.9800 12 6 -1.0484 -2.0302 -2.7261 13 8 -2.1419 -2.1570 -2.2079 14 6 -0.9456 -1.7486 -4.1567 15 6 0.2655 -1.7072 -4.7310 16 8 0.4174 -1.4493 -6.0469 17 6 -0.7463 -1.5849 -6.8710 18 6 -1.9206 -0.9032 -6.1539 19 8 -2.0821 -1.5288 -4.8748 20 6 1.3921 -3.2970 1.3948 21 6 2.0773 -3.7869 0.1166 22 1 -0.4850 0.8368 -0.0732 23 1 -0.5070 -3.5440 -0.5688 24 1 -0.7864 -1.8431 -0.1247 25 1 1.1414 -1.8888 -4.1257 26 1 -0.9699 -2.6411 -7.0213 27 1 -0.5738 -1.1040 -7.8338 28 1 -2.8310 -1.0242 -6.7409 29 1 -1.7055 0.1571 -6.0209 30 1 2.0253 -2.8803 2.1780 31 1 0.5184 -3.8494 1.7408 32 1 1.6543 -4.6613 -0.3776 33 1 3.1616 -3.6926 0.0584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:57 Heat of formation + Delta-G solvation = -125.207995 kcal Electronic energy + Delta-G solvation = -19233.386769 eV Core-core repulsion = 16033.239525 eV Total energy + Delta-G solvation = -3200.147243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12772 -40.93650 -38.62765 -38.00852 -36.74198 -34.18383 -33.26647 -30.21088 -28.19441 -27.37072 -26.33764 -23.42417 -22.92591 -21.10197 -20.72745 -19.45394 -19.19142 -18.34589 -17.77324 -17.38953 -16.89519 -16.51211 -16.07911 -15.81422 -15.44877 -15.25603 -14.98297 -14.61619 -13.91235 -13.76428 -13.43820 -13.15493 -12.86241 -12.72061 -12.34450 -12.10444 -12.05172 -11.80051 -11.59185 -11.30564 -11.13196 -10.89986 -10.66698 -10.15898 -9.35122 -7.97403 -6.18684 0.12243 1.33101 1.44534 1.45178 1.52955 1.96705 2.16316 2.43112 2.83524 3.08825 3.39093 3.59178 3.82025 3.98783 4.02821 4.23239 4.28989 4.42157 4.45246 4.61848 4.62468 4.81101 4.86839 4.94629 5.00305 5.20970 5.47179 5.54640 5.71899 5.78280 5.87463 6.26000 6.34360 6.79442 7.00397 7.45679 8.93330 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.007373 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.705891 B = 3796.480620 C = 4342.813967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.494 4.494 8 H 0.061 0.939 9 C 0.004 3.996 10 C 0.126 3.874 11 O -0.315 6.315 12 C 0.512 3.488 13 O -0.550 6.550 14 C -0.094 4.094 15 C 0.078 3.922 16 O -0.302 6.302 17 C 0.009 3.991 18 C 0.010 3.990 19 O -0.319 6.319 20 C -0.188 4.188 21 C -0.183 4.183 22 H 0.256 0.744 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.199 0.801 26 H 0.093 0.907 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -2.676 -13.729 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.004 3.996 10 C 0.052 3.948 11 O -0.230 6.230 12 C 0.359 3.641 13 O -0.443 6.443 14 C -0.140 4.140 15 C 0.012 3.988 16 O -0.213 6.213 17 C -0.065 4.065 18 C -0.065 4.065 19 O -0.235 6.235 20 C -0.226 4.226 21 C -0.220 4.220 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.103 0.897 25 H 0.215 0.785 26 H 0.112 0.888 27 H 0.182 0.818 28 H 0.174 0.826 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.193 -2.556 -13.538 13.778 hybrid contribution -0.146 0.901 0.408 1.000 sum -0.338 -1.655 -13.129 13.238 Atomic orbital electron populations 1.69957 1.07097 1.26883 1.50580 1.25670 0.95475 1.02156 0.93989 0.85666 0.78300 0.78991 0.79054 1.19258 1.21690 1.19480 1.20679 0.92798 0.89540 1.50132 0.92062 1.19070 0.92749 0.91617 0.96178 1.22277 0.99480 0.95786 0.77252 1.86042 1.33007 1.78678 1.25267 1.20394 0.82848 0.73815 0.87002 1.90770 1.29850 1.49244 1.74460 1.18931 0.87870 1.18021 0.89212 1.23608 0.97100 0.93698 0.84428 1.86109 1.37299 1.82278 1.15637 1.24160 0.83702 1.03634 0.95007 1.24093 1.03118 0.97119 0.82151 1.86323 1.27507 1.77713 1.31967 1.23007 1.02324 1.05204 0.92073 1.22984 0.98947 0.98429 1.01688 0.93399 0.95541 0.89721 0.78470 0.88841 0.81844 0.82600 0.90528 0.89708 0.90101 0.89331 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.01 10.15 21.45 0.22 -51.80 16 2 C 0.03 1.44 5.34 84.66 0.45 1.90 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.49 -26.37 8.78 25.60 0.22 -26.14 16 8 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 9 C 0.00 0.21 2.20 -52.93 -0.12 0.09 16 10 C 0.13 6.43 4.37 71.98 0.31 6.74 16 11 O -0.32 -15.50 8.61 -58.61 -0.50 -16.01 16 12 C 0.51 24.45 7.83 69.88 0.55 25.00 16 13 O -0.55 -29.73 16.60 24.57 0.41 -29.32 16 14 C -0.09 -3.61 6.61 23.39 0.15 -3.45 16 15 C 0.08 2.48 10.62 66.88 0.71 3.19 16 16 O -0.30 -7.56 10.47 -68.74 -0.72 -8.28 16 17 C 0.01 0.15 7.30 72.17 0.53 0.68 16 18 C 0.01 0.20 7.31 72.17 0.53 0.73 16 19 O -0.32 -11.13 10.28 -71.87 -0.74 -11.87 16 20 C -0.19 -8.08 9.96 30.62 0.30 -7.78 16 21 C -0.18 -7.46 9.92 30.62 0.30 -7.16 16 22 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 23 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 24 H 0.08 4.93 5.74 -2.39 -0.01 4.92 16 25 H 0.20 6.21 7.34 -2.91 -0.02 6.19 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -69.90 289.65 5.76 -64.15 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.12 Total: 14.30 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 3.95 Total: -6.21 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.22 Total: -51.80 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -1.56 Total: -65.48 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.90 5.76 -64.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.061 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds