Wall clock time and date at job start Sun Mar 29 2020 23:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46649 * 135.04532 * 3 2 1 5 5 C 1.36712 * 119.99678 * 264.18336 * 4 3 2 6 6 H 1.08005 * 120.00432 * 197.82225 * 5 4 3 7 7 C 1.39126 * 120.00340 * 17.83138 * 5 4 3 8 8 N 1.31323 * 119.99898 * 21.45968 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 201.46495 * 7 5 4 10 10 H 1.48492 * 109.47355 * 89.99721 * 9 7 5 11 11 H 1.48499 * 109.46789 * 209.99738 * 9 7 5 12 12 H 1.48497 * 109.47062 * 329.99171 * 9 7 5 13 13 C 1.34772 * 120.00299 * 84.19243 * 4 3 2 14 14 O 1.21757 * 120.00121 * 179.97438 * 13 4 3 15 15 C 1.43203 * 120.00064 * 359.97438 * 13 4 3 16 16 C 3.80100 * 112.00025 * 210.18680 * 2 1 3 17 17 C 4.76898 * 102.92763 * 221.70817 * 2 1 3 18 18 C 1.39882 * 120.17216 * 219.23457 * 17 16 15 19 19 C 1.37875 * 119.82325 * 179.97438 * 18 17 16 20 20 C 1.38409 * 120.17328 * 359.97438 * 19 18 17 21 21 C 1.38414 * 120.35278 * 0.03924 * 20 19 18 22 22 C 1.37874 * 120.17400 * 359.95535 * 21 20 19 23 23 H 1.08997 * 109.46831 * 15.04506 * 3 2 1 24 24 H 1.08998 * 109.47298 * 255.04474 * 3 2 1 25 25 H 0.96996 * 120.00215 * 180.02562 * 8 7 5 26 26 H 1.08006 * 120.08601 * 359.70392 * 18 17 16 27 27 H 1.07997 * 119.91329 * 179.97438 * 19 18 17 28 28 H 1.08002 * 119.82194 * 179.97438 * 20 19 18 29 29 H 1.08000 * 119.90801 * 179.97438 * 21 20 19 30 30 H 1.08007 * 120.08282 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 0.9783 -0.9759 5 6 3.4369 0.5740 -2.2365 6 1 4.0543 1.2059 -2.8579 7 6 2.9887 -0.6514 -2.7192 8 7 1.9343 -1.2223 -2.1834 9 14 3.8866 -1.4849 -4.1294 10 1 4.9492 -2.3685 -3.5862 11 1 2.9245 -2.2952 -4.9187 12 1 4.4996 -0.4535 -5.0043 13 6 3.2085 2.2763 -0.6310 14 8 3.6143 3.0887 -1.4419 15 6 2.8509 2.6999 0.6894 16 6 2.5599 3.0463 1.7720 17 6 2.2029 3.4700 3.0926 18 6 1.7658 2.5351 4.0368 19 6 1.4244 2.9509 5.3062 20 6 1.5139 4.2893 5.6475 21 6 1.9453 5.2206 4.7188 22 6 2.2904 4.8207 3.4453 23 1 2.9718 -0.9916 -0.2668 24 1 2.9713 0.2660 0.9928 25 1 1.6220 -2.0768 -2.5197 26 1 1.6917 1.4910 3.7707 27 1 1.0863 2.2304 6.0363 28 1 1.2446 4.6088 6.6434 29 1 2.0120 6.2631 4.9927 30 1 2.6272 5.5486 2.7219 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747378024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:48 Heat of formation + Delta-G solvation = 82.835183 kcal Electronic energy + Delta-G solvation = -16817.782514 eV Core-core repulsion = 13966.258370 eV Total energy + Delta-G solvation = -2851.524143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.080 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.11832 -38.82602 -35.83943 -34.44413 -33.66200 -32.01550 -31.00931 -30.14526 -27.60808 -25.63968 -23.44865 -22.51900 -21.33207 -18.26468 -18.01363 -17.01665 -16.36133 -15.89009 -15.14760 -14.98934 -14.38705 -14.01147 -13.81145 -13.49912 -13.25596 -13.06123 -13.00172 -12.16184 -11.77056 -11.56016 -11.43499 -11.35164 -11.26499 -10.83894 -10.64704 -10.56234 -10.46468 -10.06765 -9.42998 -9.02988 -9.01891 -8.45726 -8.23980 -6.71136 -4.14489 0.83749 1.34550 2.54047 2.81033 3.09068 3.14711 3.19655 3.58045 3.75663 3.92205 3.97820 4.23224 4.43757 4.79274 4.87791 4.90027 4.96154 5.05563 5.23554 5.35504 5.51457 5.61961 5.96057 5.97087 6.06454 6.35297 6.39681 6.41172 6.48990 6.88588 7.28594 7.64751 7.78651 8.10412 8.68154 8.79480 8.97108 9.55053 10.34176 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.036040 B = 0.004885 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.720538 B = 5729.885807 C = 6264.923708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.245 3.755 3 C 0.219 3.781 4 N -0.415 5.415 5 C -0.311 4.311 6 H 0.117 0.883 7 C 0.034 3.966 8 N -0.863 5.863 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.539 3.461 14 O -0.562 6.562 15 C -0.133 4.133 16 C -0.123 4.123 17 C 0.026 3.974 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.097 4.097 23 H 0.132 0.868 24 H 0.086 0.914 25 H 0.279 0.721 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 3.140 13.524 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.074 4.074 3 C 0.092 3.908 4 N -0.132 5.132 5 C -0.438 4.438 6 H 0.134 0.866 7 C -0.172 4.172 8 N -0.500 5.500 9 Si 0.761 3.239 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.330 3.670 14 O -0.446 6.446 15 C -0.137 4.137 16 C -0.127 4.127 17 C 0.026 3.974 18 C -0.113 4.113 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.115 4.115 23 H 0.149 0.851 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.493 3.320 13.026 13.452 hybrid contribution 0.556 -0.569 -0.723 1.075 sum 1.049 2.751 12.303 12.651 Atomic orbital electron populations 1.80890 1.13441 1.09472 1.10724 1.29122 0.95215 0.92070 0.90947 1.18802 0.81923 0.97611 0.92467 1.43504 1.53960 1.03897 1.11837 1.19878 1.29649 1.03211 0.91041 0.86551 1.25456 0.94821 0.97541 0.99369 1.69846 1.19097 1.18250 1.42769 0.85758 0.78965 0.79182 0.79967 1.19788 1.20839 1.18951 1.14666 0.86521 0.82653 0.83202 1.90741 1.51293 1.51653 1.50949 1.21457 0.99940 0.99045 0.93232 1.19103 1.00346 1.01052 0.92182 1.16065 1.00158 0.93299 0.87909 1.21341 0.97683 0.99529 0.92745 1.21060 1.00392 0.96133 0.96226 1.21266 0.99519 0.93320 0.99477 1.21054 0.99856 0.99744 0.93251 1.21355 0.98786 0.94612 0.96714 0.85075 0.89568 0.91050 0.85342 0.85594 0.85972 0.85662 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.30 18.54 42.15 0.78 -10.52 16 2 C 0.24 5.56 13.42 -20.76 -0.28 5.28 16 3 C 0.22 4.48 4.91 -6.83 -0.03 4.44 16 4 N -0.41 -9.95 2.59 -120.66 -0.31 -10.26 16 5 C -0.31 -7.87 9.31 -15.05 -0.14 -8.01 16 6 H 0.12 3.07 7.38 -52.48 -0.39 2.68 16 7 C 0.03 0.82 4.86 -17.44 -0.08 0.73 16 8 N -0.86 -21.12 9.48 55.51 0.53 -20.59 16 9 Si 0.94 18.79 29.61 -169.99 -5.03 13.76 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.54 13.30 7.42 -14.33 -0.11 13.19 16 14 O -0.56 -15.64 16.74 5.14 0.09 -15.56 16 15 C -0.13 -2.84 11.65 -38.84 -0.45 -3.29 16 16 C -0.12 -2.29 13.24 -38.84 -0.51 -2.81 16 17 C 0.03 0.39 5.75 -106.74 -0.61 -0.22 16 18 C -0.09 -1.24 9.77 -39.10 -0.38 -1.62 16 19 C -0.12 -1.27 10.03 -39.65 -0.40 -1.67 16 20 C -0.12 -1.15 10.04 -39.45 -0.40 -1.55 16 21 C -0.12 -1.27 10.03 -39.65 -0.40 -1.67 16 22 C -0.10 -1.26 9.77 -39.10 -0.38 -1.64 16 23 H 0.13 2.62 6.46 -51.93 -0.34 2.28 16 24 H 0.09 1.44 7.13 -51.93 -0.37 1.07 16 25 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 26 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -30.64 288.04 -6.13 -36.77 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.34 Total: 0.90 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -4.18 Total: 1.16 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.99 Total: -41.38 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.64 -6.13 -36.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747378024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.603 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds