Wall clock time and date at job start Sun Mar 29 2020 23:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48497 * 109.47579 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47075 * 299.99819 * 3 2 1 6 6 H 1.48502 * 109.47221 * 59.99383 * 3 2 1 7 7 C 1.37884 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99416 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.34508 * 125.79205 * 89.99904 * 17 16 14 19 19 C 1.41386 * 106.84245 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83707 * 0.02562 * 19 18 17 21 21 O 1.34299 * 125.78541 * 269.69025 * 17 16 14 22 22 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 24 24 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 25 25 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 26 26 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 27 27 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 28 28 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 29 29 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 30 30 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 31 31 H 1.08004 * 126.58159 * 0.03376 * 18 17 16 32 32 H 1.07995 * 126.57789 * 179.97438 * 19 18 17 33 33 H 1.07996 * 125.78671 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3933 -6.7757 1.4025 15 8 4.6283 -7.5826 0.5345 16 6 5.2169 -6.7651 2.6645 17 6 6.2585 -7.8519 2.5937 18 6 7.5007 -7.7196 2.0949 19 6 8.1309 -8.9785 2.2259 20 6 7.2358 -9.8048 2.7963 21 8 6.1059 -9.1151 3.0232 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9446 -4.9827 -0.8886 26 1 0.9452 -4.9822 0.8914 27 1 3.3216 -5.7960 -0.8401 28 1 2.1821 -6.9375 -0.0874 29 1 5.7082 -5.7977 2.7696 30 1 4.5684 -6.9384 3.5232 31 1 7.9338 -6.8237 1.6751 32 1 9.1374 -9.2288 1.9248 33 1 7.4000 -10.8448 3.0368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815219162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:26 Heat of formation + Delta-G solvation = -121.374765 kcal Electronic energy + Delta-G solvation = -17712.762368 eV Core-core repulsion = 14512.781346 eV Total energy + Delta-G solvation = -3199.981022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.74818 -40.29001 -37.12763 -36.06053 -33.39876 -32.80041 -32.43064 -30.13212 -27.58722 -26.83472 -22.85903 -22.31975 -21.94014 -21.41544 -20.33101 -17.82791 -17.59970 -16.64841 -16.62638 -16.29132 -15.60565 -15.47188 -14.80070 -14.63340 -14.24602 -13.61461 -13.51863 -13.00081 -12.89442 -12.71599 -12.58370 -12.04171 -11.89993 -11.45186 -10.94416 -10.89126 -10.76248 -10.47595 -10.40044 -10.07871 -10.05793 -9.13231 -8.90158 -8.68366 -8.23335 -6.13620 -4.15302 1.45491 2.21665 2.36007 2.66839 3.04544 3.28047 3.34588 3.41072 4.30991 4.32477 4.68318 4.78175 4.80840 4.86584 5.04372 5.17881 5.21174 5.23153 5.44379 5.61487 5.74279 5.84087 5.86408 5.93107 6.07172 6.31116 6.55706 6.93412 7.03714 7.38030 7.76404 7.79430 8.10743 8.50354 8.97598 9.49627 10.98014 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.035478 B = 0.003420 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.027695 B = 8186.121692 C = 8725.640794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.461 3.539 15 O -0.507 6.507 16 C -0.034 4.034 17 C -0.004 4.004 18 C -0.190 4.190 19 C -0.214 4.214 20 C -0.036 4.036 21 O -0.172 6.172 22 H 0.264 0.736 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 -17.059 6.021 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.255 6.255 14 C 0.303 3.697 15 O -0.395 6.395 16 C -0.071 4.071 17 C -0.054 4.054 18 C -0.209 4.209 19 C -0.233 4.233 20 C -0.104 4.104 21 O -0.068 6.068 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.935 -17.231 5.862 21.233 hybrid contribution 0.210 0.750 -0.303 0.836 sum 11.145 -16.482 5.559 20.658 Atomic orbital electron populations 1.69967 1.06119 1.27116 1.50588 1.24957 0.94992 0.99485 0.95106 0.86270 0.80028 0.82501 0.77635 1.19449 1.20841 1.20803 1.21091 0.94144 0.89274 1.50774 0.91431 1.20249 0.88754 0.83497 0.95534 1.87915 1.35345 1.12617 1.95235 1.22327 0.93227 0.85437 1.00631 1.23239 0.93655 0.98850 0.84098 1.86581 1.43280 1.53826 1.41767 1.23324 0.79402 0.78365 0.88599 1.90682 1.67576 1.37908 1.43347 1.19650 0.94679 0.97036 0.95743 1.21471 0.96183 0.84052 1.03673 1.21615 0.94417 0.99809 1.05029 1.21826 1.01585 0.93709 1.06213 1.24019 0.84190 0.98181 1.04018 1.83984 1.37347 1.20893 1.64626 0.92666 0.97601 0.97450 0.91877 0.93129 0.90409 0.90380 0.84305 0.85777 0.83236 0.83346 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.10 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.27 5.69 36.01 0.20 5.47 16 10 O -0.39 -9.41 10.30 -38.80 -0.40 -9.81 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.08 1.19 5.84 37.16 0.22 1.40 16 13 O -0.34 -5.50 10.19 -42.04 -0.43 -5.93 16 14 C 0.46 6.72 7.95 36.01 0.29 7.01 16 15 O -0.51 -8.71 15.78 -18.75 -0.30 -9.01 16 16 C -0.03 -0.36 6.35 -29.04 -0.18 -0.54 16 17 C 0.00 -0.04 5.82 -35.63 -0.21 -0.25 16 18 C -0.19 -2.14 10.81 -39.70 -0.43 -2.57 16 19 C -0.21 -2.12 10.91 -39.70 -0.43 -2.55 16 20 C -0.04 -0.34 12.09 29.42 0.36 0.01 16 21 O -0.17 -2.07 10.65 5.71 0.06 -2.01 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -34.78 303.15 -5.35 -40.13 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.19 Total: -4.04 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.59 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.06 Total: -26.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.78 -5.35 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815219162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.246 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds