Wall clock time and date at job start Sun Mar 29 2020 23:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48497 * 109.47579 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47075 * 299.99819 * 3 2 1 6 6 H 1.48502 * 109.47221 * 59.99383 * 3 2 1 7 7 C 1.37884 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99416 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.34508 * 125.79205 * 89.99904 * 17 16 14 19 19 C 1.41386 * 106.84245 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83707 * 0.02562 * 19 18 17 21 21 O 1.34299 * 125.78541 * 269.69025 * 17 16 14 22 22 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 24 24 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 25 25 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 26 26 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 27 27 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 28 28 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 29 29 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 30 30 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 31 31 H 1.08004 * 126.58159 * 0.03376 * 18 17 16 32 32 H 1.07995 * 126.57789 * 179.97438 * 19 18 17 33 33 H 1.07996 * 125.78671 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3933 -6.7757 1.4025 15 8 4.6283 -7.5826 0.5345 16 6 5.2169 -6.7651 2.6645 17 6 6.2585 -7.8519 2.5937 18 6 7.5007 -7.7196 2.0949 19 6 8.1309 -8.9785 2.2259 20 6 7.2358 -9.8048 2.7963 21 8 6.1059 -9.1151 3.0232 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9446 -4.9827 -0.8886 26 1 0.9452 -4.9822 0.8914 27 1 3.3216 -5.7960 -0.8401 28 1 2.1821 -6.9375 -0.0874 29 1 5.7082 -5.7977 2.7696 30 1 4.5684 -6.9384 3.5232 31 1 7.9338 -6.8237 1.6751 32 1 9.1374 -9.2288 1.9248 33 1 7.4000 -10.8448 3.0368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815219162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:25 Heat of formation + Delta-G solvation = -143.816108 kcal Electronic energy + Delta-G solvation = -17713.735498 eV Core-core repulsion = 14512.781346 eV Total energy + Delta-G solvation = -3200.954152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.53979 -41.48930 -38.77784 -37.49251 -34.94719 -34.23390 -33.29262 -31.62131 -29.12697 -28.23650 -24.60673 -24.00667 -22.73587 -22.56610 -21.21840 -18.97542 -18.71661 -18.37123 -17.98994 -17.49426 -17.12753 -16.61274 -16.43990 -16.20381 -15.44190 -15.14112 -14.75224 -14.16391 -13.81354 -13.76389 -13.74563 -13.54872 -13.21993 -12.90726 -12.79130 -12.70575 -12.44662 -12.02014 -11.76023 -11.66151 -11.26345 -10.90240 -10.86667 -10.27432 -9.47001 -8.32216 -6.44275 0.62292 1.09107 1.41645 1.42680 1.51280 1.57507 1.82875 2.15600 2.35152 3.01988 3.05503 3.50275 3.76195 3.91540 4.08629 4.11070 4.11399 4.32719 4.40657 4.43802 4.50591 4.66492 4.85810 4.89359 4.98768 5.14608 5.18018 5.38271 5.55045 5.58068 5.95301 6.15296 6.49523 6.63548 6.79843 7.27469 8.80252 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.035478 B = 0.003420 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.027695 B = 8186.121692 C = 8725.640794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.353 6.353 14 C 0.462 3.538 15 O -0.537 6.537 16 C -0.028 4.028 17 C -0.028 4.028 18 C -0.203 4.203 19 C -0.230 4.230 20 C -0.034 4.034 21 O -0.190 6.190 22 H 0.271 0.729 23 H -0.008 1.008 24 H -0.009 1.009 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -17.145 6.557 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.132 3.868 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.270 6.270 14 C 0.306 3.694 15 O -0.427 6.427 16 C -0.064 4.064 17 C -0.078 4.078 18 C -0.222 4.222 19 C -0.249 4.249 20 C -0.101 4.101 21 O -0.087 6.087 22 H 0.080 0.920 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.188 0.812 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 12.003 -17.337 6.404 22.038 hybrid contribution -0.114 0.645 -0.473 0.808 sum 11.888 -16.692 5.931 21.334 Atomic orbital electron populations 1.70063 1.07709 1.28639 1.50504 1.25950 0.95974 1.03357 0.93901 0.85132 0.78663 0.77310 0.78277 1.18856 1.19722 1.19587 1.21424 0.94135 0.90883 1.52251 0.92069 1.19884 0.88575 0.84382 0.93918 1.87858 1.35524 1.14175 1.95338 1.22645 0.94446 0.83300 1.01915 1.23189 0.93142 0.99140 0.84032 1.86580 1.43977 1.54657 1.41742 1.24083 0.78713 0.77180 0.89415 1.90661 1.68291 1.39019 1.44731 1.19801 0.94497 0.97904 0.94245 1.21699 0.96748 0.84471 1.04882 1.21953 0.94706 1.00841 1.04719 1.22194 1.02818 0.93290 1.06590 1.24846 0.83168 0.99507 1.02610 1.83975 1.38546 1.21155 1.65030 0.91996 0.99074 0.99142 0.90070 0.92339 0.91084 0.87512 0.82155 0.83398 0.82537 0.81215 0.74361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.98 44.02 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.55 -32.62 9.43 25.60 0.24 -32.38 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.53 5.69 71.24 0.41 11.93 16 10 O -0.41 -19.91 10.30 -145.57 -1.50 -21.41 16 11 C 0.05 1.93 6.33 71.98 0.46 2.38 16 12 C 0.08 2.43 5.84 71.98 0.42 2.85 16 13 O -0.35 -11.27 10.19 -48.81 -0.50 -11.77 16 14 C 0.46 13.17 7.95 71.24 0.57 13.73 16 15 O -0.54 -18.29 15.78 21.98 0.35 -17.95 16 16 C -0.03 -0.56 6.35 29.10 0.18 -0.37 16 17 C -0.03 -0.65 5.82 24.83 0.14 -0.51 16 18 C -0.20 -4.41 10.81 22.19 0.24 -4.17 16 19 C -0.23 -4.20 10.91 22.19 0.24 -3.96 16 20 C -0.03 -0.59 12.09 66.97 0.81 0.22 16 21 O -0.19 -4.36 10.65 -2.47 -0.03 -4.39 16 22 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 28 H 0.11 2.69 8.13 -2.39 -0.02 2.67 16 29 H 0.16 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.77 303.15 5.91 -68.86 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.10 Total: 5.10 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.17 Total: -9.42 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.68 Total: -55.51 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.77 5.91 -68.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815219162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.954 kcal (2) G-P(sol) polarization free energy of solvation -74.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds