Wall clock time and date at job start Sun Mar 29 2020 23:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31508 * 120.00371 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47069 * 89.99877 * 9 7 5 11 11 H 1.48494 * 109.47181 * 210.00189 * 9 7 5 12 12 H 1.48503 * 109.46976 * 330.00143 * 9 7 5 13 13 O 1.45196 * 109.46964 * 295.00396 * 3 2 1 14 14 C 1.34893 * 117.00151 * 90.00292 * 13 3 2 15 15 O 1.21633 * 119.99991 * 359.97438 * 14 13 3 16 16 C 1.46395 * 119.99800 * 180.27367 * 14 13 3 17 17 C 1.36755 * 125.45984 * 179.72366 * 16 14 13 18 18 C 1.37412 * 113.28852 * 179.97438 * 17 16 14 19 19 C 1.50694 * 122.44615 * 179.97438 * 18 17 16 20 20 C 1.33863 * 115.10907 * 359.97438 * 18 17 16 21 21 S 1.70618 * 110.96264 * 359.72391 * 20 18 17 22 22 H 1.09001 * 109.47212 * 299.99985 * 1 2 3 23 23 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 24 24 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 26 26 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 27 27 H 0.96993 * 120.00562 * 180.02562 * 8 7 5 28 28 H 1.08003 * 123.35838 * 0.02562 * 17 16 14 29 29 H 1.08999 * 109.47723 * 89.99677 * 19 18 17 30 30 H 1.09004 * 109.47127 * 210.00128 * 19 18 17 31 31 H 1.09005 * 109.47320 * 329.99153 * 19 18 17 32 32 H 1.08002 * 124.51999 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8793 1.3358 9 14 3.0964 0.1099 2.5707 10 1 2.8744 -1.3262 2.2645 11 1 3.7942 0.2357 3.8754 12 1 1.7882 0.8093 2.6395 13 8 1.6558 2.0917 -1.2406 14 6 0.4668 2.7286 -1.2559 15 8 -0.2297 2.7403 -0.2588 16 6 0.0119 3.4003 -2.4745 17 6 -1.1709 4.0720 -2.6158 18 6 -1.3446 4.6087 -3.8688 19 6 -2.5753 5.3903 -4.2501 20 6 -0.3407 4.3866 -4.7260 21 16 0.9027 3.4806 -3.9883 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8771 0.4809 2.1123 28 1 -1.8959 4.1716 -1.8215 29 1 -2.4165 6.4467 -4.0334 30 1 -2.7710 5.2632 -5.3149 31 1 -3.4287 5.0262 -3.6779 32 1 -0.3185 4.7383 -5.7469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:18 Heat of formation + Delta-G solvation = -59.701171 kcal Electronic energy + Delta-G solvation = -16531.618945 eV Core-core repulsion = 13777.065161 eV Total energy + Delta-G solvation = -2754.553783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81038 -38.20140 -35.93465 -33.61091 -31.96179 -31.02692 -28.08449 -27.71507 -24.92943 -22.76632 -21.27165 -19.94125 -18.96408 -18.23817 -16.75598 -16.39231 -15.69588 -15.64580 -14.77043 -14.08376 -13.92014 -13.48425 -13.21468 -12.87967 -12.60223 -12.25551 -12.11734 -12.05178 -11.90200 -11.74458 -11.47943 -11.23624 -10.78862 -10.74648 -10.12296 -9.99299 -9.63809 -9.55544 -9.09841 -8.85143 -8.66477 -8.38847 -6.23997 -4.26565 0.52595 1.56518 2.01652 2.32999 3.17759 3.30298 3.32697 3.33412 3.40797 4.25440 4.87457 4.97952 5.05482 5.22566 5.38035 5.46881 5.47480 5.75316 5.79903 5.85760 5.93142 6.01530 6.26303 6.34780 6.43429 6.55725 6.66097 6.72572 7.02328 7.32083 7.48233 8.18559 8.53568 8.82929 9.32740 10.87952 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.005801 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.838638 B = 4825.437243 C = 5221.924460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.199 3.801 4 H 0.048 0.952 5 C -0.526 4.526 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.336 6.336 14 C 0.527 3.473 15 O -0.506 6.506 16 C -0.243 4.243 17 C -0.059 4.059 18 C -0.123 4.123 19 C -0.091 4.091 20 C -0.253 4.253 21 S 0.258 5.742 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.270 0.730 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 5.478 -11.134 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.145 3.855 4 H 0.066 0.934 5 C -0.563 4.563 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.252 6.252 14 C 0.370 3.630 15 O -0.398 6.398 16 C -0.361 4.361 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.390 4.390 21 S 0.529 5.471 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.170 0.830 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.618 4.832 -11.218 16.857 hybrid contribution -1.830 0.044 1.292 2.241 sum -13.448 4.876 -9.925 17.411 Atomic orbital electron populations 1.21905 0.96957 1.00075 1.01829 1.22371 0.94401 0.99513 1.02307 1.21023 0.96421 0.88089 0.79974 0.93422 1.20779 0.87583 1.40016 1.07958 0.89423 1.24714 0.94936 0.95224 0.97318 1.69826 1.08484 1.44246 1.29835 0.87013 0.81059 0.80168 0.81312 1.19868 1.21628 1.18466 1.86599 1.33427 1.62467 1.42734 1.19600 0.80932 0.76468 0.86009 1.90827 1.55703 1.58857 1.34368 1.23867 1.01612 1.11990 0.98672 1.20616 0.95803 0.95385 0.97406 1.18677 0.98514 1.03268 0.93134 1.20483 0.93921 0.99011 1.01609 1.25367 1.00389 1.07994 1.05291 1.83502 1.17057 1.46011 1.00562 0.92497 0.93581 0.93853 0.91141 0.91684 0.92024 0.83005 0.91285 0.91650 0.91432 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.56 37.16 0.32 -2.70 16 2 C -0.15 -3.39 5.15 -26.73 -0.14 -3.53 16 3 C 0.20 5.03 1.84 -27.88 -0.05 4.98 16 4 H 0.05 1.28 6.22 -51.93 -0.32 0.95 16 5 C -0.53 -15.07 9.48 -34.44 -0.33 -15.40 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 7 C 0.08 2.33 5.45 -17.82 -0.10 2.24 16 8 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 9 Si 0.88 21.60 24.41 -169.99 -4.15 17.45 16 10 H -0.27 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 O -0.34 -7.83 9.66 -41.02 -0.40 -8.23 16 14 C 0.53 11.00 6.38 34.01 0.22 11.21 16 15 O -0.51 -11.36 14.03 -19.37 -0.27 -11.63 16 16 C -0.24 -4.06 6.45 -36.84 -0.24 -4.30 16 17 C -0.06 -0.83 9.79 -40.42 -0.40 -1.22 16 18 C -0.12 -1.41 5.78 -106.46 -0.62 -2.02 16 19 C -0.09 -0.75 10.13 36.00 0.36 -0.38 16 20 C -0.25 -2.76 10.67 29.20 0.31 -2.45 16 21 S 0.26 3.51 22.92 -107.50 -2.46 1.05 16 22 H 0.06 1.18 7.79 -51.93 -0.40 0.77 16 23 H 0.05 0.91 6.06 -51.93 -0.31 0.59 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.07 1.53 3.22 -51.93 -0.17 1.36 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 281.57 15.07 4.24 4.24 Total: -1.00 -31.20 281.57 -6.69 -37.89 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.77 Total: -1.34 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.65 Total: -13.57 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.77 Total: -25.86 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.67 Total: -19.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.46 Total: 1.05 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.20 -6.69 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.808 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds