Wall clock time and date at job start Sun Mar 29 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31508 * 120.00371 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47069 * 89.99877 * 9 7 5 11 11 H 1.48494 * 109.47181 * 210.00189 * 9 7 5 12 12 H 1.48503 * 109.46976 * 330.00143 * 9 7 5 13 13 O 1.45196 * 109.46964 * 295.00396 * 3 2 1 14 14 C 1.34893 * 117.00151 * 90.00292 * 13 3 2 15 15 O 1.21633 * 119.99991 * 359.97438 * 14 13 3 16 16 C 1.46395 * 119.99800 * 180.27367 * 14 13 3 17 17 C 1.36755 * 125.45984 * 179.72366 * 16 14 13 18 18 C 1.37412 * 113.28852 * 179.97438 * 17 16 14 19 19 C 1.50694 * 122.44615 * 179.97438 * 18 17 16 20 20 C 1.33863 * 115.10907 * 359.97438 * 18 17 16 21 21 S 1.70618 * 110.96264 * 359.72391 * 20 18 17 22 22 H 1.09001 * 109.47212 * 299.99985 * 1 2 3 23 23 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 24 24 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 26 26 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 27 27 H 0.96993 * 120.00562 * 180.02562 * 8 7 5 28 28 H 1.08003 * 123.35838 * 0.02562 * 17 16 14 29 29 H 1.08999 * 109.47723 * 89.99677 * 19 18 17 30 30 H 1.09004 * 109.47127 * 210.00128 * 19 18 17 31 31 H 1.09005 * 109.47320 * 329.99153 * 19 18 17 32 32 H 1.08002 * 124.51999 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8793 1.3358 9 14 3.0964 0.1099 2.5707 10 1 2.8744 -1.3262 2.2645 11 1 3.7942 0.2357 3.8754 12 1 1.7882 0.8093 2.6395 13 8 1.6558 2.0917 -1.2406 14 6 0.4668 2.7286 -1.2559 15 8 -0.2297 2.7403 -0.2588 16 6 0.0119 3.4003 -2.4745 17 6 -1.1709 4.0720 -2.6158 18 6 -1.3446 4.6087 -3.8688 19 6 -2.5753 5.3903 -4.2501 20 6 -0.3407 4.3866 -4.7260 21 16 0.9027 3.4806 -3.9883 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8771 0.4809 2.1123 28 1 -1.8959 4.1716 -1.8215 29 1 -2.4165 6.4467 -4.0334 30 1 -2.7710 5.2632 -5.3149 31 1 -3.4287 5.0262 -3.6779 32 1 -0.3185 4.7383 -5.7469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:17 Heat of formation + Delta-G solvation = -78.743027 kcal Electronic energy + Delta-G solvation = -16532.444661 eV Core-core repulsion = 13777.065161 eV Total energy + Delta-G solvation = -2755.379500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46630 -39.30177 -37.65887 -35.56018 -33.97874 -32.08945 -29.85310 -28.71979 -26.31531 -24.65024 -22.82240 -21.60136 -20.04776 -19.73909 -18.71108 -18.10319 -17.36276 -16.99081 -16.52262 -15.40260 -15.26528 -14.87780 -14.66446 -14.18041 -14.07491 -13.92253 -13.64799 -13.27503 -13.20199 -13.12025 -12.88896 -12.77902 -12.60514 -12.06510 -11.82416 -11.71237 -11.55508 -11.37360 -11.18095 -10.76955 -9.94357 -9.40322 -8.46572 -6.55623 -0.62305 0.46752 1.00120 1.21335 1.22712 1.29689 1.39532 1.82316 1.91059 2.18027 2.85379 3.76216 4.03553 4.06082 4.13151 4.14871 4.23938 4.37751 4.52802 4.68962 4.81720 4.89634 4.91346 4.93539 5.00014 5.06408 5.27099 5.30599 5.37550 5.48564 5.57753 6.09887 6.47736 6.77525 7.08813 8.69359 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.005801 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.838638 B = 4825.437243 C = 5221.924460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.031 0.969 5 C -0.542 4.542 6 H 0.046 0.954 7 C 0.034 3.966 8 N -0.928 5.928 9 Si 0.936 3.064 10 H -0.248 1.248 11 H -0.282 1.282 12 H -0.256 1.256 13 O -0.350 6.350 14 C 0.524 3.476 15 O -0.532 6.532 16 C -0.295 4.295 17 C -0.040 4.040 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.218 4.218 21 S 0.246 5.754 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.276 0.724 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 5.575 -12.321 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.148 3.852 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.065 0.935 7 C -0.166 4.166 8 N -0.566 5.566 9 Si 0.761 3.239 10 H -0.173 1.173 11 H -0.208 1.208 12 H -0.181 1.181 13 O -0.267 6.267 14 C 0.370 3.630 15 O -0.425 6.425 16 C -0.413 4.413 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.356 4.356 21 S 0.516 5.484 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.173 0.827 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.154 4.933 -12.432 19.474 hybrid contribution -1.044 0.168 1.490 1.827 sum -15.198 5.100 -10.942 19.409 Atomic orbital electron populations 1.21812 0.94564 1.02111 1.01327 1.22277 0.96492 0.97289 1.02320 1.20721 0.94141 0.89837 0.80505 0.95137 1.20945 0.89473 1.40130 1.07380 0.93531 1.25527 0.96084 0.95454 0.99547 1.69945 1.10336 1.45321 1.31034 0.86035 0.79304 0.80400 0.78169 1.17340 1.20830 1.18065 1.86577 1.35307 1.63234 1.41550 1.20195 0.79675 0.75785 0.87313 1.90787 1.55992 1.59984 1.35706 1.23667 1.03835 1.15207 0.98572 1.20923 0.94439 0.93456 0.98642 1.18987 1.00065 1.03397 0.91885 1.20573 0.92217 0.98939 1.03057 1.25828 0.98212 1.05009 1.06528 1.83547 1.18225 1.47100 0.99505 0.93326 0.93809 0.90430 0.90770 0.91945 0.91452 0.82706 0.90218 0.89525 0.90847 0.77664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.56 71.98 0.62 -4.84 16 2 C -0.15 -6.62 5.15 30.60 0.16 -6.46 16 3 C 0.20 10.52 1.84 29.85 0.06 10.57 16 4 H 0.03 1.69 6.22 -2.39 -0.01 1.67 16 5 C -0.54 -32.42 9.48 25.60 0.24 -32.18 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 7 C 0.03 1.99 5.45 84.66 0.46 2.45 16 8 N -0.93 -57.24 13.96 21.45 0.30 -56.94 16 9 Si 0.94 44.56 24.41 68.60 1.67 46.23 16 10 H -0.25 -10.85 6.83 99.48 0.68 -10.17 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.99 6.53 99.48 0.65 -11.34 16 13 O -0.35 -16.94 9.66 -58.08 -0.56 -17.50 16 14 C 0.52 22.45 6.38 69.95 0.45 22.90 16 15 O -0.53 -24.36 14.03 19.40 0.27 -24.09 16 16 C -0.29 -9.84 6.45 24.05 0.16 -9.68 16 17 C -0.04 -1.06 9.79 21.73 0.21 -0.85 16 18 C -0.13 -2.59 5.78 -21.06 -0.12 -2.71 16 19 C -0.09 -1.09 10.13 71.23 0.72 -0.37 16 20 C -0.22 -3.99 10.67 66.82 0.71 -3.28 16 21 S 0.25 6.46 22.92 -56.49 -1.29 5.17 16 22 H 0.05 1.95 7.79 -2.39 -0.02 1.93 16 23 H 0.04 1.69 6.06 -2.39 -0.01 1.68 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.06 2.84 3.22 -2.39 -0.01 2.83 16 27 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.73 8.12 -2.38 -0.02 0.71 16 31 H 0.07 0.84 8.13 -2.38 -0.02 0.82 16 32 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -70.33 281.57 5.09 -65.23 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.04 Total: 6.34 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.66 Total: -24.44 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.30 Total: -56.94 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.29 Total: -41.59 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.29 Total: 5.17 kcal Total: -70.33 5.09 -65.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.508 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds