Wall clock time and date at job start Sun Mar 29 2020 23:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99638 * 2 1 4 4 H 1.48489 * 109.47297 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.46951 * 120.00412 * 3 2 1 6 6 H 1.48502 * 109.46977 * 239.99639 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00256 * 186.35789 * 7 2 1 9 9 C 1.50704 * 120.00264 * 6.36007 * 7 2 1 10 10 O 1.45205 * 112.84472 * 293.84644 * 9 7 2 11 11 C 1.34228 * 117.00160 * 294.98103 * 10 9 7 12 12 O 1.20833 * 119.99922 * 2.79596 * 11 10 9 13 13 C 1.50693 * 120.00223 * 182.80188 * 11 10 9 14 14 H 1.09002 * 110.05900 * 303.50125 * 13 11 10 15 15 C 1.54268 * 110.07834 * 64.99657 * 13 11 10 16 16 C 1.54531 * 103.10001 * 120.30335 * 15 13 11 17 17 C 1.51786 * 103.52758 * 16.49230 * 16 15 13 18 18 O 1.20830 * 126.42956 * 149.37610 * 17 16 15 19 19 O 1.34527 * 107.14112 * 329.37351 * 17 16 15 20 20 C 1.53775 * 113.61581 * 162.54414 * 9 7 2 21 21 C 1.53787 * 87.07857 * 220.01623 * 20 9 7 22 22 C 1.53774 * 113.61419 * 65.04165 * 9 7 2 23 23 H 0.97008 * 120.00180 * 175.04936 * 1 2 3 24 24 H 1.08997 * 110.69398 * 238.70750 * 15 13 11 25 25 H 1.09000 * 110.68438 * 1.72869 * 15 13 11 26 26 H 1.08994 * 110.61465 * 135.00566 * 16 15 13 27 27 H 1.09004 * 110.61041 * 257.82734 * 16 15 13 28 28 H 1.09000 * 113.61678 * 334.56193 * 20 9 7 29 29 H 1.08998 * 113.61833 * 105.46869 * 20 9 7 30 30 H 1.09001 * 113.61507 * 270.88001 * 21 20 9 31 31 H 1.09000 * 113.61309 * 139.97621 * 21 20 9 32 32 H 1.09006 * 113.61135 * 254.53223 * 22 9 7 33 33 H 1.08994 * 113.61916 * 25.34920 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1968 0.1041 9 6 1.2580 -2.4952 -0.1435 10 8 0.3943 -2.7779 0.9890 11 6 0.9907 -2.9861 2.1733 12 8 2.1907 -2.8840 2.2717 13 6 0.1638 -3.3472 3.3803 14 1 -0.5963 -2.5855 3.5542 15 6 -0.5028 -4.7229 3.1733 16 6 0.0548 -5.5621 4.3449 17 6 0.6074 -4.5181 5.2981 18 8 0.6664 -4.6051 6.5018 19 8 1.0190 -3.4777 4.5512 20 6 2.1539 -3.6779 -0.5476 21 6 1.0073 -4.1302 -1.4673 22 6 0.5621 -2.6588 -1.5049 23 1 -0.4851 -0.8370 -0.0725 24 1 -1.5874 -4.6394 3.2413 25 1 -0.2102 -5.1522 2.2151 26 1 -0.7420 -6.1331 4.8213 27 1 0.8467 -6.2262 3.9984 28 1 3.0537 -3.3801 -1.0859 29 1 2.3577 -4.3704 0.2690 30 1 0.2908 -4.7909 -0.9792 31 1 1.3450 -4.5090 -2.4320 32 1 -0.5192 -2.5285 -1.4610 33 1 1.0258 -2.0812 -2.3045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870346808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:29 Heat of formation + Delta-G solvation = -141.787916 kcal Electronic energy + Delta-G solvation = -19602.862446 eV Core-core repulsion = 16401.996244 eV Total energy + Delta-G solvation = -3200.866203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10203 -39.59707 -37.78713 -36.83981 -34.47570 -33.05059 -32.50546 -28.98272 -26.10471 -24.86525 -23.49064 -22.61039 -21.53530 -20.58368 -18.59103 -17.83193 -17.14191 -16.98692 -16.49283 -15.61131 -15.09392 -14.96042 -14.61823 -13.88398 -13.81301 -13.58492 -13.31023 -12.63975 -12.46580 -12.31981 -12.00159 -11.56331 -11.47778 -10.99928 -10.86596 -10.64171 -10.51246 -10.31348 -10.28954 -10.22939 -10.10445 -9.49515 -9.11420 -8.56270 -8.28190 -6.50382 -4.29134 1.81573 2.77456 3.01159 3.38591 3.41942 3.59535 3.75579 3.89419 4.19258 4.42839 4.55172 4.74207 5.12852 5.22592 5.31379 5.37036 5.42780 5.56498 5.58182 5.66998 5.79145 6.11638 6.20095 6.54389 6.59349 6.64555 6.73875 6.96443 7.19448 7.34300 7.51952 7.99281 8.31912 8.69883 8.80155 9.46830 10.87497 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.007561 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.281287 B = 3702.511243 C = 4416.430477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.032 3.968 3 Si 1.065 2.935 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.595 4.595 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.351 6.351 11 C 0.462 3.538 12 O -0.476 6.476 13 C 0.089 3.911 14 H 0.129 0.871 15 C -0.139 4.139 16 C -0.187 4.187 17 C 0.489 3.511 18 O -0.449 6.449 19 O -0.324 6.324 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.107 4.107 23 H 0.279 0.721 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -9.891 1.488 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.176 4.176 3 Si 0.892 3.108 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.079 0.921 9 C 0.176 3.824 10 O -0.269 6.269 11 C 0.302 3.698 12 O -0.362 6.362 13 C 0.032 3.968 14 H 0.147 0.853 15 C -0.177 4.177 16 C -0.225 4.225 17 C 0.328 3.672 18 O -0.332 6.332 19 O -0.241 6.241 20 C -0.182 4.182 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.238 -8.105 2.138 8.985 hybrid contribution 0.294 -1.664 -0.073 1.692 sum -2.943 -9.769 2.065 10.410 Atomic orbital electron populations 1.70733 1.06782 1.32066 1.42732 1.25909 0.96471 1.02725 0.92496 0.83603 0.75117 0.75132 0.76937 1.20598 1.21212 1.21066 1.22076 0.95143 0.90319 1.55613 0.92092 1.21026 0.87037 0.93679 0.80609 1.86394 1.44353 1.79356 1.16765 1.22231 0.87367 0.75678 0.84566 1.90643 1.15602 1.44754 1.85204 1.23010 0.90647 1.00446 0.82720 0.85316 1.22811 1.02248 0.92438 1.00211 1.23094 1.03971 0.99119 0.96346 1.23313 0.73390 0.82950 0.87502 1.90702 1.50095 1.79907 1.12483 1.87185 1.52098 1.50865 1.33988 1.23328 0.97717 0.98534 0.98590 1.22972 0.98910 0.97453 0.99298 1.22931 1.00118 0.94307 0.97083 0.90928 0.87774 0.87991 0.86918 0.86521 0.89779 0.92931 0.91194 0.92448 0.92154 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.52 55.43 0.75 -24.36 16 2 C 0.03 0.89 5.36 -17.82 -0.10 0.79 16 3 Si 1.06 24.74 29.91 -169.99 -5.08 19.66 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.59 -16.22 7.37 -34.44 -0.25 -16.48 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 9 C 0.21 4.96 0.11 -90.96 -0.01 4.95 16 10 O -0.35 -7.93 9.22 -39.25 -0.36 -8.30 16 11 C 0.46 9.98 6.48 36.00 0.23 10.21 16 12 O -0.48 -12.03 14.65 -25.30 -0.37 -12.40 16 13 C 0.09 1.44 4.12 -27.22 -0.11 1.32 16 14 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 15 C -0.14 -1.55 6.75 -25.26 -0.17 -1.72 16 16 C -0.19 -1.93 6.98 -26.54 -0.19 -2.11 16 17 C 0.49 7.40 8.57 36.54 0.31 7.72 16 18 O -0.45 -7.90 18.00 -18.29 -0.33 -8.22 16 19 O -0.32 -5.83 10.31 -46.41 -0.48 -6.31 16 20 C -0.14 -2.98 6.90 -25.92 -0.18 -3.16 16 21 C -0.15 -2.62 8.03 -25.92 -0.21 -2.83 16 22 C -0.11 -2.23 6.55 -25.92 -0.17 -2.40 16 23 H 0.28 7.74 5.76 -40.82 -0.24 7.51 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 1.13 7.71 -51.93 -0.40 0.73 16 26 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 29 H 0.05 1.08 7.33 -51.93 -0.38 0.70 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 33 H 0.09 1.91 8.09 -51.93 -0.42 1.49 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -32.99 285.56 -6.41 -39.40 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.00 Total: -0.07 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.84 Total: -3.70 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.75 Total: -24.36 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.54 Total: -35.23 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.99 -6.41 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870346808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.385 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds