Wall clock time and date at job start Sun Mar 29 2020 23:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99638 * 2 1 4 4 H 1.48489 * 109.47297 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.46951 * 120.00412 * 3 2 1 6 6 H 1.48502 * 109.46977 * 239.99639 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00256 * 186.35789 * 7 2 1 9 9 C 1.50704 * 120.00264 * 6.36007 * 7 2 1 10 10 O 1.45205 * 112.84472 * 293.84644 * 9 7 2 11 11 C 1.34228 * 117.00160 * 294.98103 * 10 9 7 12 12 O 1.20833 * 119.99922 * 2.79596 * 11 10 9 13 13 C 1.50693 * 120.00223 * 182.80188 * 11 10 9 14 14 H 1.09002 * 110.05900 * 303.50125 * 13 11 10 15 15 C 1.54268 * 110.07834 * 64.99657 * 13 11 10 16 16 C 1.54531 * 103.10001 * 120.30335 * 15 13 11 17 17 C 1.51786 * 103.52758 * 16.49230 * 16 15 13 18 18 O 1.20830 * 126.42956 * 149.37610 * 17 16 15 19 19 O 1.34527 * 107.14112 * 329.37351 * 17 16 15 20 20 C 1.53775 * 113.61581 * 162.54414 * 9 7 2 21 21 C 1.53787 * 87.07857 * 220.01623 * 20 9 7 22 22 C 1.53774 * 113.61419 * 65.04165 * 9 7 2 23 23 H 0.97008 * 120.00180 * 175.04936 * 1 2 3 24 24 H 1.08997 * 110.69398 * 238.70750 * 15 13 11 25 25 H 1.09000 * 110.68438 * 1.72869 * 15 13 11 26 26 H 1.08994 * 110.61465 * 135.00566 * 16 15 13 27 27 H 1.09004 * 110.61041 * 257.82734 * 16 15 13 28 28 H 1.09000 * 113.61678 * 334.56193 * 20 9 7 29 29 H 1.08998 * 113.61833 * 105.46869 * 20 9 7 30 30 H 1.09001 * 113.61507 * 270.88001 * 21 20 9 31 31 H 1.09000 * 113.61309 * 139.97621 * 21 20 9 32 32 H 1.09006 * 113.61135 * 254.53223 * 22 9 7 33 33 H 1.08994 * 113.61916 * 25.34920 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1968 0.1041 9 6 1.2580 -2.4952 -0.1435 10 8 0.3943 -2.7779 0.9890 11 6 0.9907 -2.9861 2.1733 12 8 2.1907 -2.8840 2.2717 13 6 0.1638 -3.3472 3.3803 14 1 -0.5963 -2.5855 3.5542 15 6 -0.5028 -4.7229 3.1733 16 6 0.0548 -5.5621 4.3449 17 6 0.6074 -4.5181 5.2981 18 8 0.6664 -4.6051 6.5018 19 8 1.0190 -3.4777 4.5512 20 6 2.1539 -3.6779 -0.5476 21 6 1.0073 -4.1302 -1.4673 22 6 0.5621 -2.6588 -1.5049 23 1 -0.4851 -0.8370 -0.0725 24 1 -1.5874 -4.6394 3.2413 25 1 -0.2102 -5.1522 2.2151 26 1 -0.7420 -6.1331 4.8213 27 1 0.8467 -6.2262 3.9984 28 1 3.0537 -3.3801 -1.0859 29 1 2.3577 -4.3704 0.2690 30 1 0.2908 -4.7909 -0.9792 31 1 1.3450 -4.5090 -2.4320 32 1 -0.5192 -2.5285 -1.4610 33 1 1.0258 -2.0812 -2.3045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870346808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:29 Heat of formation + Delta-G solvation = -161.771186 kcal Electronic energy + Delta-G solvation = -19603.728986 eV Core-core repulsion = 16401.996244 eV Total energy + Delta-G solvation = -3201.732742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39639 -41.25358 -39.25761 -38.37389 -36.22956 -34.57018 -34.08373 -30.23234 -28.00352 -26.53238 -24.99459 -24.03772 -22.82157 -21.96177 -20.31039 -19.60943 -18.58690 -18.33878 -17.76942 -17.28790 -16.64747 -16.52710 -15.80397 -15.69871 -15.36990 -15.20104 -14.54918 -14.38048 -14.03407 -13.53565 -13.25162 -13.12326 -12.79333 -12.50120 -12.38926 -12.29258 -12.19395 -12.05320 -11.93710 -11.79188 -11.47192 -11.14326 -10.87722 -10.57840 -10.18340 -8.63721 -6.42983 0.64820 1.28822 1.41543 1.48819 1.56560 1.74638 2.42686 2.49770 2.83687 3.11488 3.18670 3.55920 3.59795 3.82501 3.94767 4.02012 4.16469 4.21138 4.47662 4.64947 4.76879 4.80238 4.83258 4.90710 5.01802 5.09576 5.36988 5.43057 5.57677 5.69910 6.07136 6.17097 6.19026 6.60107 7.03463 7.37737 8.74989 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.007561 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.281287 B = 3702.511243 C = 4416.430477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.008 4.008 3 Si 1.100 2.900 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.613 4.613 8 H 0.033 0.967 9 C 0.185 3.815 10 O -0.348 6.348 11 C 0.454 3.546 12 O -0.524 6.524 13 C 0.091 3.909 14 H 0.145 0.855 15 C -0.127 4.127 16 C -0.167 4.167 17 C 0.483 3.517 18 O -0.482 6.482 19 O -0.363 6.363 20 C -0.144 4.144 21 C -0.118 4.118 22 C -0.107 4.107 23 H 0.274 0.726 24 H 0.144 0.856 25 H 0.106 0.894 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -11.762 1.011 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.211 4.211 3 Si 0.923 3.077 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.650 4.650 8 H 0.051 0.949 9 C 0.151 3.849 10 O -0.265 6.265 11 C 0.296 3.704 12 O -0.413 6.413 13 C 0.035 3.965 14 H 0.162 0.838 15 C -0.165 4.165 16 C -0.204 4.204 17 C 0.326 3.674 18 O -0.367 6.367 19 O -0.281 6.281 20 C -0.182 4.182 21 C -0.155 4.155 22 C -0.144 4.144 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.125 0.875 26 H 0.170 0.830 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.733 -9.997 1.643 11.182 hybrid contribution 0.822 -1.086 0.141 1.370 sum -3.911 -11.083 1.785 11.888 Atomic orbital electron populations 1.70817 1.07109 1.31800 1.44699 1.26945 0.96760 1.05425 0.91997 0.83151 0.74537 0.72551 0.77488 1.20050 1.21668 1.18972 1.22268 0.94192 0.92683 1.55840 0.94871 1.21232 0.88537 0.93325 0.81787 1.86345 1.43670 1.79288 1.17245 1.23335 0.87490 0.74083 0.85486 1.90618 1.17897 1.46908 1.85854 1.23151 0.89342 1.04205 0.79812 0.83807 1.22964 1.04071 0.88770 1.00659 1.23129 1.05289 0.97588 0.94419 1.24125 0.72554 0.83219 0.87494 1.90678 1.51544 1.80321 1.14154 1.87138 1.53346 1.52869 1.34767 1.23282 0.98223 0.97465 0.99252 1.22857 0.97105 0.95482 1.00084 1.22877 0.99688 0.96882 0.95000 0.91475 0.83836 0.87534 0.82999 0.85046 0.90649 0.93190 0.88870 0.89406 0.92194 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.81 13.52 21.44 0.29 -51.52 16 2 C -0.01 -0.43 5.36 84.65 0.45 0.03 16 3 Si 1.10 50.62 29.91 68.60 2.05 52.67 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.61 -34.32 7.37 25.60 0.19 -34.13 16 8 H 0.03 1.98 7.82 -2.91 -0.02 1.95 16 9 C 0.18 8.77 0.11 -11.02 0.00 8.77 16 10 O -0.35 -15.59 9.22 -51.40 -0.47 -16.06 16 11 C 0.45 19.57 6.48 71.23 0.46 20.03 16 12 O -0.52 -27.20 14.65 28.20 0.41 -26.79 16 13 C 0.09 2.83 4.12 30.28 0.12 2.95 16 14 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 15 C -0.13 -2.32 6.75 31.54 0.21 -2.11 16 16 C -0.17 -2.77 6.98 30.72 0.21 -2.56 16 17 C 0.48 13.94 8.57 71.58 0.61 14.56 16 18 O -0.48 -16.63 18.00 21.51 0.39 -16.24 16 19 O -0.36 -12.97 10.31 -48.25 -0.50 -13.47 16 20 C -0.14 -5.88 6.90 31.12 0.21 -5.67 16 21 C -0.12 -3.81 8.03 31.12 0.25 -3.56 16 22 C -0.11 -4.35 6.55 31.12 0.20 -4.15 16 23 H 0.27 15.33 5.76 -92.70 -0.53 14.80 16 24 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 1.93 7.71 -2.39 -0.02 1.91 16 26 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 3.14 8.09 -2.39 -0.02 3.12 16 29 H 0.05 2.02 7.33 -2.39 -0.02 2.00 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 2.41 7.75 -2.38 -0.02 2.40 16 33 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 Total: -1.00 -75.36 285.56 6.46 -68.90 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.35 Total: 8.35 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 2.94 Total: -5.83 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.29 Total: -51.52 kcal Atomic # 8 Polarization: -72.39 SS G_CDS: -0.17 Total: -72.56 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -75.36 6.46 -68.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870346808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.875 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds