Wall clock time and date at job start Sun Mar 29 2020 23:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33859 * 124.51785 * 2 1 4 4 C 1.37414 * 115.10837 * 180.02562 * 3 2 1 5 5 C 1.36751 * 113.29201 * 359.97438 * 4 3 2 6 6 C 1.46386 * 125.46419 * 180.26965 * 5 4 3 7 7 O 1.21627 * 120.00246 * 359.71081 * 6 5 4 8 8 O 1.34894 * 120.00067 * 179.71757 * 6 5 4 9 9 C 1.45202 * 117.00166 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47196 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47371 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47499 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00289 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99896 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99770 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47405 * 60.00029 * 16 14 12 18 18 H 1.48503 * 109.46918 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46820 * 299.99815 * 16 14 12 20 20 S 1.70614 * 124.51760 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47227 * 299.97169 * 1 2 3 23 23 H 1.09001 * 109.47441 * 59.97653 * 1 2 3 24 24 H 1.08001 * 122.44613 * 359.97438 * 3 2 1 25 25 H 1.08006 * 123.35403 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47254 * 299.99479 * 9 8 6 27 27 H 1.08996 * 109.47022 * 59.99900 * 9 8 6 28 28 H 1.09003 * 109.47476 * 300.00164 * 10 9 8 29 29 H 1.09002 * 109.47187 * 59.99752 * 10 9 8 30 30 H 1.09003 * 109.47537 * 300.00272 * 11 10 9 31 31 H 1.09002 * 109.47032 * 59.99823 * 11 10 9 32 32 H 0.97003 * 119.99705 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2655 1.1029 0.0000 4 6 3.6212 0.8783 -0.0006 5 6 3.9493 -0.4493 -0.0005 6 6 5.3105 -0.9877 0.0047 7 8 6.2635 -0.2320 0.0040 8 8 5.5080 -2.3221 0.0100 9 6 6.8843 -2.7849 0.0143 10 6 6.9080 -4.3146 0.0206 11 6 8.3582 -4.8022 0.0245 12 6 8.3816 -6.3090 0.0314 13 1 7.4548 -6.8636 0.0325 14 6 9.5862 -6.9798 0.0364 15 7 10.7148 -6.3046 0.0346 16 14 9.6151 -8.8476 0.0442 17 1 8.9251 -9.3585 -1.1674 18 1 11.0228 -9.3208 0.0493 19 1 8.9207 -9.3483 1.2576 20 16 2.4738 -1.4058 0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8898 24 1 1.8429 2.0968 -0.0004 25 1 4.3545 1.6712 -0.0002 26 1 7.3941 -2.4170 -0.8761 27 1 7.3907 -2.4103 0.9038 28 1 6.3983 -4.6823 0.9113 29 1 6.4014 -4.6896 -0.8687 30 1 8.8676 -4.4347 -0.8663 31 1 8.8652 -4.4273 0.9136 32 1 11.5623 -6.7766 0.0385 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914618250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:39 Heat of formation + Delta-G solvation = -76.689697 kcal Electronic energy + Delta-G solvation = -15388.129052 eV Core-core repulsion = 12632.838591 eV Total energy + Delta-G solvation = -2755.290461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12256 -38.18613 -36.30835 -33.98317 -32.42066 -31.66070 -28.20261 -26.75576 -24.13663 -23.23976 -21.79776 -20.38127 -19.12300 -18.28404 -16.71634 -16.29911 -16.15535 -16.04420 -14.63990 -14.48193 -14.47189 -13.95886 -13.50817 -13.14358 -12.72306 -12.51077 -12.21485 -12.11178 -12.01521 -11.82964 -11.07274 -10.95130 -10.70555 -10.63732 -10.46931 -10.39211 -9.72265 -9.51675 -9.17497 -8.93546 -8.80710 -8.37983 -6.02907 -4.06063 0.21448 1.24370 1.70195 2.08314 2.83406 2.93745 3.33011 3.37246 3.39871 4.43092 4.44231 4.82113 4.92670 5.02652 5.11556 5.27989 5.32945 5.52767 5.58075 5.61566 5.71570 5.86563 6.01941 6.08801 6.45778 6.54074 6.81456 6.97960 7.60499 7.71694 7.86211 7.95297 8.36295 8.99932 9.58113 11.08534 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.003447 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.313255 B = 8121.261601 C = 8709.519317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.204 4.204 3 C -0.163 4.163 4 C -0.046 4.046 5 C -0.260 4.260 6 C 0.534 3.466 7 O -0.503 6.503 8 O -0.355 6.355 9 C 0.070 3.930 10 C -0.109 4.109 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 S 0.257 5.743 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.145 0.855 25 H 0.154 0.846 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 13.587 -0.076 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.324 4.324 3 C -0.193 4.193 4 C -0.080 4.080 5 C -0.379 4.379 6 C 0.377 3.623 7 O -0.393 6.393 8 O -0.272 6.272 9 C -0.003 4.003 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 S 0.526 5.474 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.225 12.168 -0.075 23.603 hybrid contribution 0.651 0.698 0.004 0.955 sum -19.574 12.866 -0.071 23.424 Atomic orbital electron populations 1.20396 0.87308 1.03304 1.03369 1.24528 1.01929 0.98816 1.07168 1.19869 0.92345 0.99754 1.07334 1.20758 0.96425 0.94709 0.96068 1.23668 0.95519 0.97735 1.20968 1.19615 0.87637 0.81689 0.73326 1.90878 1.42543 1.59637 1.46245 1.86580 1.34690 1.22396 1.83547 1.23558 0.76894 0.97442 1.02374 1.21779 1.02131 0.88716 1.02037 1.19047 0.88343 0.96151 0.97724 1.21137 0.92429 0.91350 1.51155 0.92459 1.25032 0.95638 0.98600 0.95180 1.69958 0.97364 1.35613 1.50436 0.86600 0.76951 0.85449 0.78673 1.20165 1.21260 1.20170 1.83438 0.92694 1.05596 1.65667 0.91125 0.90182 0.90184 0.83751 0.82833 0.91297 0.91303 0.92073 0.92079 0.96193 0.96197 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.33 36.00 0.37 -0.10 16 2 C -0.20 -1.77 6.28 -35.85 -0.23 -2.00 16 3 C -0.16 -1.46 9.99 -41.42 -0.41 -1.87 16 4 C -0.05 -0.52 10.01 -40.42 -0.40 -0.93 16 5 C -0.26 -3.52 6.45 -36.84 -0.24 -3.75 16 6 C 0.53 9.03 7.92 34.01 0.27 9.30 16 7 O -0.50 -9.64 16.64 -19.36 -0.32 -9.96 16 8 O -0.36 -6.31 10.08 -41.02 -0.41 -6.72 16 9 C 0.07 1.34 5.48 37.16 0.20 1.54 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.44 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.50 16 12 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 S 0.26 2.75 22.85 -107.50 -2.46 0.30 16 21 H 0.07 0.35 8.11 -51.93 -0.42 -0.08 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 25 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -31.84 300.66 -8.27 -40.11 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -4.19 Total: -5.29 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.13 Total: -13.34 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.74 Total: -16.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.46 Total: 0.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.84 -8.27 -40.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914618250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.580 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds